Analysis of interatomic Contacts of Structural Units in PDB entry:
5EY5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EY5 entry

There are 4 chains in PDB entry 5EY5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 269
B	GLY 3	ARG 385
C	ASN 2	ARG 261
D	GLY 3	ARG 385

There are 67 helices in PDB entry 5EY5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	29	43	Right-handed alpha
Helix 3	AA3	A	61	74	Right-handed alpha
Helix 4	AA4	A	77	92	Right-handed alpha
Helix 5	AA5	A	102	110	Right-handed alpha
Helix 6	AA6	A	110	122	Right-handed alpha
Helix 7	AA7	A	132	135	Right-handed 310
Helix 8	AA8	A	136	147	Right-handed alpha
Helix 9	AA9	A	159	170	Right-handed alpha
Helix 10	AB1	A	216	225	Right-handed alpha
Helix 11	AB2	A	233	242	Right-handed alpha
Helix 12	AB3	A	248	264	Right-handed alpha
Helix 13	AB4	B	14	16	Right-handed 310
Helix 14	AB5	B	17	33	Right-handed alpha
Helix 15	AB6	B	34	48	Right-handed alpha
Helix 16	AB7	B	58	66	Right-handed alpha
Helix 17	AB8	B	75	78	Right-handed 310
Helix 18	AB9	B	83	98	Right-handed alpha
Helix 19	AC1	B	110	124	Right-handed alpha
Helix 20	AC2	B	133	139	Right-handed alpha
Helix 21	AC3	B	139	149	Right-handed alpha
Helix 22	AC4	B	162	178	Right-handed alpha
Helix 23	AC5	B	193	218	Right-handed alpha
Helix 24	AC6	B	231	239	Right-handed alpha
Helix 25	AC7	B	240	242	Right-handed 310
Helix 26	AC8	B	258	262	Right-handed 310
Helix 27	AC9	B	266	271	Right-handed alpha
Helix 28	AD1	B	298	302	Right-handed 310
Helix 29	AD2	B	307	317	Right-handed alpha
Helix 30	AD3	B	326	341	Right-handed alpha
Helix 31	AD4	B	345	359	Right-handed alpha
Helix 32	AD5	B	360	362	Right-handed 310
Helix 33	AD6	B	376	378	Right-handed 310
Helix 34	AD7	B	379	385	Right-handed alpha
Helix 35	AD8	C	3	14	Right-handed alpha
Helix 36	AD9	C	29	44	Right-handed alpha
Helix 37	AE1	C	61	74	Right-handed alpha
Helix 38	AE2	C	77	92	Right-handed alpha
Helix 39	AE3	C	102	110	Right-handed alpha
Helix 40	AE4	C	110	122	Right-handed alpha
Helix 41	AE5	C	132	135	Right-handed 310
Helix 42	AE6	C	136	147	Right-handed alpha
Helix 43	AE7	C	159	169	Right-handed alpha
Helix 44	AE8	C	216	225	Right-handed alpha
Helix 45	AE9	C	233	243	Right-handed alpha
Helix 46	AF1	C	248	261	Right-handed alpha
Helix 47	AF2	D	14	16	Right-handed 310
Helix 48	AF3	D	17	33	Right-handed alpha
Helix 49	AF4	D	34	48	Right-handed alpha
Helix 50	AF5	D	58	66	Right-handed alpha
Helix 51	AF6	D	75	78	Right-handed 310
Helix 52	AF7	D	83	98	Right-handed alpha
Helix 53	AF8	D	110	124	Right-handed alpha
Helix 54	AF9	D	133	139	Right-handed alpha
Helix 55	AG1	D	139	149	Right-handed alpha
Helix 56	AG2	D	162	177	Right-handed alpha
Helix 57	AG3	D	193	218	Right-handed alpha
Helix 58	AG4	D	231	239	Right-handed alpha
Helix 59	AG5	D	240	242	Right-handed 310
Helix 60	AG6	D	258	262	Right-handed 310
Helix 61	AG7	D	266	271	Right-handed alpha
Helix 62	AG8	D	298	302	Right-handed 310
Helix 63	AG9	D	307	316	Right-handed alpha
Helix 64	AH1	D	326	341	Right-handed alpha
Helix 65	AH2	D	345	362	Right-handed alpha
Helix 66	AH3	D	376	378	Right-handed 310
Helix 67	AH4	D	379	385	Right-handed alpha

There are 10 sheets in PDB entry 5EY5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	125	127	parallel
Strand 3	A	97	100	parallel
Strand 4	A	48	51	parallel
Strand 5	A	18	24	parallel
Strand 6	A	229	232	parallel
Strand 7	A	208	211	parallel
Strand 8	A	174	177	parallel
Strand 9	A	153	154	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	8	9	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	367	371	parallel
Strand 4	B	223	227	parallel
Strand 5	B	248	256	parallel
Strand 6	B	319	325	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	126	132	parallel
Strand 3	B	102	106	parallel
Strand 4	B	181	183	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	279	283	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	125	127	parallel
Strand 3	C	97	100	parallel
Strand 4	C	48	51	parallel
Strand 5	C	18	24	parallel
Strand 6	C	229	232	parallel
Strand 7	C	208	211	parallel
Strand 8	C	174	177	parallel
Strand 9	C	153	154	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	5	first strand
Strand 2	D	8	9	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	69	73	anti-parallel
Strand 3	D	367	371	parallel
Strand 4	D	223	227	parallel
Strand 5	D	248	256	parallel
Strand 6	D	319	325	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	126	132	parallel
Strand 3	D	102	106	parallel
Strand 4	D	181	183	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	279	283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EY5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EY5