Analysis of interatomic Contacts of Structural Units in PDB entry:
5EY9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EY9 entry

There are 2 chains in PDB entry 5EY9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	ALA 626
B	TYR 3	PHE 625

There are 48 helices in PDB entry 5EY9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	56	74	Right-handed alpha
Helix 3	AA3	A	87	101	Right-handed alpha
Helix 4	AA4	A	116	127	Right-handed alpha
Helix 5	AA5	A	134	147	Right-handed alpha
Helix 6	AA6	A	160	162	Right-handed 310
Helix 7	AA7	A	163	170	Right-handed 310
Helix 8	AA8	A	201	215	Right-handed alpha
Helix 9	AA9	A	230	239	Right-handed alpha
Helix 10	AB1	A	239	244	Right-handed alpha
Helix 11	AB2	A	251	258	Right-handed alpha
Helix 12	AB3	A	259	267	Right-handed alpha
Helix 13	AB4	A	281	292	Right-handed alpha
Helix 14	AB5	A	317	329	Right-handed alpha
Helix 15	AB6	A	330	332	Right-handed 310
Helix 16	AB7	A	345	348	Right-handed 310
Helix 17	AB8	A	367	372	Right-handed alpha
Helix 18	AB9	A	433	442	Right-handed alpha
Helix 19	AC1	A	484	486	Right-handed 310
Helix 20	AC2	A	495	506	Right-handed alpha
Helix 21	AC3	A	523	525	Right-handed 310
Helix 22	AC4	A	526	532	Right-handed alpha
Helix 23	AC5	A	562	579	Right-handed alpha
Helix 24	AC6	A	602	612	Right-handed alpha
Helix 25	AC7	B	20	32	Right-handed alpha
Helix 26	AC8	B	56	74	Right-handed alpha
Helix 27	AC9	B	87	101	Right-handed alpha
Helix 28	AD1	B	116	127	Right-handed alpha
Helix 29	AD2	B	134	147	Right-handed alpha
Helix 30	AD3	B	160	162	Right-handed 310
Helix 31	AD4	B	163	170	Right-handed 310
Helix 32	AD5	B	201	215	Right-handed alpha
Helix 33	AD6	B	230	239	Right-handed alpha
Helix 34	AD7	B	239	244	Right-handed alpha
Helix 35	AD8	B	251	258	Right-handed alpha
Helix 36	AD9	B	259	267	Right-handed alpha
Helix 37	AE1	B	281	292	Right-handed alpha
Helix 38	AE2	B	317	329	Right-handed alpha
Helix 39	AE3	B	330	332	Right-handed 310
Helix 40	AE4	B	345	348	Right-handed 310
Helix 41	AE5	B	367	372	Right-handed alpha
Helix 42	AE6	B	433	442	Right-handed alpha
Helix 43	AE7	B	484	486	Right-handed 310
Helix 44	AE8	B	495	506	Right-handed alpha
Helix 45	AE9	B	523	525	Right-handed 310
Helix 46	AF1	B	526	532	Right-handed alpha
Helix 47	AF2	B	562	579	Right-handed alpha
Helix 48	AF3	B	602	612	Right-handed alpha

There are 18 sheets in PDB entry 5EY9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	12	13	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	36	42	anti-parallel
Strand 3	A	247	249	parallel
Strand 4	A	221	224	parallel
Strand 5	A	276	280	parallel
Strand 6	A	306	311	parallel
Strand 7	A	338	343	parallel
Strand 8	A	350	353	anti-parallel
Strand 9	A	393	394	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	79	82	parallel
Strand 3	A	130	133	parallel
Strand 4	A	155	158	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	195	199	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	366	first strand
Strand 2	A	385	389	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	398	404	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	462	473	anti-parallel
Strand 5	A	443	444	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	410	first strand
Strand 2	A	398	404	anti-parallel
Strand 3	A	417	423	anti-parallel
Strand 4	A	462	473	anti-parallel
Strand 5	A	476	482	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	489	first strand
Strand 2	A	492	494	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	521	first strand
Strand 2	A	546	554	anti-parallel
Strand 3	A	582	588	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	12	13	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	55	first strand
Strand 2	B	36	42	anti-parallel
Strand 3	B	247	249	parallel
Strand 4	B	221	224	parallel
Strand 5	B	276	280	parallel
Strand 6	B	306	311	parallel
Strand 7	B	338	343	parallel
Strand 8	B	350	353	anti-parallel
Strand 9	B	393	394	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	79	82	parallel
Strand 3	B	130	133	parallel
Strand 4	B	155	158	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	185	first strand
Strand 2	B	195	199	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	362	366	first strand
Strand 2	B	385	389	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	398	404	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	462	473	anti-parallel
Strand 5	B	443	444	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	410	first strand
Strand 2	B	398	404	anti-parallel
Strand 3	B	417	423	anti-parallel
Strand 4	B	462	473	anti-parallel
Strand 5	B	476	482	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	493	494	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	521	first strand
Strand 2	B	546	554	anti-parallel
Strand 3	B	584	588	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EY9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EY9