Analysis of interatomic Contacts of Structural Units in PDB entry:
5EYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EYF entry

There are 2 chains in PDB entry 5EYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 31GLU 271
B
 ALA 29GLU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5EYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 41Right-handed alpha
Helix 2
AA2
A
66 81Right-handed alpha
Helix 3
AA3
A
95 102Right-handed alpha
Helix 4
AA4
A
117 120Right-handed 310
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
161 171Right-handed alpha
Helix 7
AA7
A
181 191Right-handed alpha
Helix 8
AA8
A
201 209Right-handed alpha
Helix 9
AA9
A
234 252Right-handed alpha
Helix 10
AB1
A
252 262Right-handed alpha
Helix 11
AB2
B
32 41Right-handed alpha
Helix 12
AB3
B
66 81Right-handed alpha
Helix 13
AB4
B
95 102Right-handed alpha
Helix 14
AB5
B
115 120Right-handed alpha
Helix 15
AB6
B
145 149Right-handed 310
Helix 16
AB7
B
162 171Right-handed alpha
Helix 17
AB8
B
181 191Right-handed alpha
Helix 18
AB9
B
201 209Right-handed alpha
Helix 19
AC1
B
234 252Right-handed alpha
Helix 20
AC2
B
252 262Right-handed alpha
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There are 10 sheets in PDB entry 5EYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 90first strand
Strand 2
A
42 47parallel
Strand 3
A
107 108parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
55 58anti-parallel
Strand 3
A
63 65anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
229 231anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
224 226anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
154 158parallel
Strand 3
A
196 200parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
214 217anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 90first strand
Strand 2
B
42 47parallel
Strand 3
B
107 108parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
55 58anti-parallel
Strand 3
B
63 65anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
229 231anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
224 226anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
154 158parallel
Strand 3
B
196 200parallel
Strand 4
B
133 138anti-parallel
Strand 5
B
214 217anti-parallel
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