Analysis of interatomic Contacts of Structural Units in PDB entry:
5EYV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EYV entry

There are 2 chains in PDB entry 5EYV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4THR 479
B
 PHE 4THR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5EYV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 14Right-handed alpha
Helix 2
AA2
A
17 24Right-handed alpha
Helix 3
AA3
A
25 45Right-handed alpha
Helix 4
AA4
A
53 62Right-handed alpha
Helix 5
AA5
A
67 76Right-handed alpha
Helix 6
AA6
A
80 93Right-handed alpha
Helix 7
AA7
A
96 100Right-handed 310
Helix 8
AA8
A
105 143Right-handed alpha
Helix 9
AA9
A
162 186Right-handed alpha
Helix 10
AB1
A
200 207Right-handed alpha
Helix 11
AB2
A
210 225Right-handed alpha
Helix 12
AB3
A
240 270Right-handed alpha
Helix 13
AB4
A
293 309Right-handed alpha
Helix 14
AB5
A
310 319Right-handed alpha
Helix 15
AB6
A
325 327Right-handed 310
Helix 16
AB7
A
328 357Right-handed alpha
Helix 17
AB8
A
360 376Right-handed alpha
Helix 18
AB9
A
376 387Right-handed alpha
Helix 19
AC1
A
391 414Right-handed alpha
Helix 20
AC2
A
417 426Right-handed alpha
Helix 21
AC3
A
427 433Right-handed 310
Helix 22
AC4
A
435 440Right-handed alpha
Helix 23
AC5
A
441 446Right-handed alpha
Helix 24
AC6
A
448 460Right-handed alpha
Helix 25
AC7
A
460 465Right-handed alpha
Helix 26
AC8
A
466 472Right-handed 310
Helix 27
AC9
B
9 14Right-handed alpha
Helix 28
AD1
B
17 24Right-handed alpha
Helix 29
AD2
B
25 47Right-handed alpha
Helix 30
AD3
B
52 62Right-handed alpha
Helix 31
AD4
B
67 79Right-handed alpha
Helix 32
AD5
B
80 93Right-handed alpha
Helix 33
AD6
B
96 100Right-handed 310
Helix 34
AD7
B
105 143Right-handed alpha
Helix 35
AD8
B
162 186Right-handed alpha
Helix 36
AD9
B
200 207Right-handed alpha
Helix 37
AE1
B
210 225Right-handed alpha
Helix 38
AE2
B
240 270Right-handed alpha
Helix 39
AE3
B
293 309Right-handed alpha
Helix 40
AE4
B
310 319Right-handed alpha
Helix 41
AE5
B
325 327Right-handed 310
Helix 42
AE6
B
328 356Right-handed alpha
Helix 43
AE7
B
360 372Right-handed alpha
Helix 44
AE8
B
372 387Right-handed alpha
Helix 45
AE9
B
437 445Right-handed 310
Helix 46
AF1
B
448 460Right-handed alpha
Helix 47
AF2
B
460 465Right-handed alpha
Helix 48
AF3
B
466 472Right-handed 310
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There are 5 sheets in PDB entry 5EYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 152first strand
Strand 2
A
155 161anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
358 359anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
160 161anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
155 156anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
358 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il