Analysis of interatomic Contacts of Structural Units in PDB entry:
5EZ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EZ3 entry

There are 3 chains in PDB entry 5EZ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 12	ALA 551
B	LYS 12	SER 552
C	LYS 12	PHE 233

There are 99 helices in PDB entry 5EZ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	39	Right-handed alpha
Helix 2	AA2	A	43	59	Right-handed alpha
Helix 3	AA3	A	59	72	Right-handed alpha
Helix 4	AA4	A	92	105	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	115	119	Right-handed 310
Helix 7	AA7	A	121	137	Right-handed alpha
Helix 8	AA8	A	140	155	Right-handed alpha
Helix 9	AA9	A	157	170	Right-handed alpha
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	200	204	Right-handed 310
Helix 12	AB3	A	212	214	Right-handed 310
Helix 13	AB4	A	294	299	Right-handed alpha
Helix 14	AB5	A	299	332	Right-handed alpha
Helix 15	AB6	A	342	373	Right-handed alpha
Helix 16	AB7	A	376	409	Right-handed alpha
Helix 17	AB8	A	410	415	Right-handed 310
Helix 18	AB9	A	419	433	Right-handed alpha
Helix 19	AC1	A	436	451	Right-handed alpha
Helix 20	AC2	A	452	467	Right-handed alpha
Helix 21	AC3	A	470	487	Right-handed alpha
Helix 22	AC4	A	490	510	Right-handed alpha
Helix 23	AC5	A	512	524	Right-handed alpha
Helix 24	AC6	A	536	539	Right-handed 310
Helix 25	AC7	A	540	549	Right-handed alpha
Helix 26	AC8	B	32	39	Right-handed alpha
Helix 27	AC9	B	43	58	Right-handed alpha
Helix 28	AD1	B	59	72	Right-handed alpha
Helix 29	AD2	B	92	105	Right-handed alpha
Helix 30	AD3	B	109	113	Right-handed 310
Helix 31	AD4	B	115	119	Right-handed 310
Helix 32	AD5	B	121	137	Right-handed alpha
Helix 33	AD6	B	140	155	Right-handed alpha
Helix 34	AD7	B	157	170	Right-handed alpha
Helix 35	AD8	B	179	183	Right-handed 310
Helix 36	AD9	B	200	204	Right-handed 310
Helix 37	AE1	B	212	214	Right-handed 310
Helix 38	AE2	B	294	299	Right-handed alpha
Helix 39	AE3	B	299	332	Right-handed alpha
Helix 40	AE4	B	342	373	Right-handed alpha
Helix 41	AE5	B	376	408	Right-handed alpha
Helix 42	AE6	B	409	415	Right-handed 310
Helix 43	AE7	B	419	433	Right-handed alpha
Helix 44	AE8	B	436	451	Right-handed alpha
Helix 45	AE9	B	451	467	Right-handed alpha
Helix 46	AF1	B	470	487	Right-handed alpha
Helix 47	AF2	B	490	510	Right-handed alpha
Helix 48	AF3	B	512	524	Right-handed alpha
Helix 49	AF4	B	540	549	Right-handed alpha
Helix 50	AF5	C	32	39	Right-handed alpha
Helix 51	AF6	C	43	58	Right-handed alpha
Helix 52	AF7	C	59	72	Right-handed alpha
Helix 53	AF8	C	92	105	Right-handed alpha
Helix 54	AF9	C	109	113	Right-handed 310
Helix 55	AG1	C	115	119	Right-handed 310
Helix 56	AG2	C	121	135	Right-handed alpha
Helix 57	AG3	C	140	155	Right-handed alpha
Helix 58	AG4	C	157	170	Right-handed alpha
Helix 59	AG5	C	179	183	Right-handed 310
Helix 60	AG6	C	200	204	Right-handed 310
Helix 61	AG7	C	212	214	Right-handed 310
Helix 62	AG8	C	294	332	Right-handed alpha
Helix 63	AG9	C	342	373	Right-handed alpha
Helix 64	AH1	C	376	409	Right-handed alpha
Helix 65	AH2	C	410	415	Right-handed 310
Helix 66	AH3	C	419	427	Right-handed alpha
Helix 67	AH4	C	427	433	Right-handed alpha
Helix 68	AH5	C	436	451	Right-handed alpha
Helix 69	AH6	C	452	467	Right-handed alpha
Helix 70	AH7	C	470	487	Right-handed alpha
Helix 71	AH8	C	490	510	Right-handed alpha
Helix 72	AH9	C	512	524	Right-handed alpha
Helix 73	AI1	C	536	539	Right-handed 310
Helix 74	AI2	C	540	549	Right-handed alpha
Helix 75	AI3	D	32	39	Right-handed alpha
Helix 76	AI4	D	43	58	Right-handed alpha
Helix 77	AI5	D	59	72	Right-handed alpha
Helix 78	AI6	D	92	105	Right-handed alpha
Helix 79	AI7	D	109	113	Right-handed 310
Helix 80	AI8	D	115	119	Right-handed 310
Helix 81	AI9	D	121	137	Right-handed alpha
Helix 82	AJ1	D	140	155	Right-handed alpha
Helix 83	AJ2	D	157	169	Right-handed alpha
Helix 84	AJ3	D	179	183	Right-handed 310
Helix 85	AJ4	D	200	204	Right-handed 310
Helix 86	AJ5	D	212	214	Right-handed 310
Helix 87	AJ6	D	294	299	Right-handed alpha
Helix 88	AJ7	D	299	332	Right-handed alpha
Helix 89	AJ8	D	342	373	Right-handed alpha
Helix 90	AJ9	D	376	409	Right-handed alpha
Helix 91	AK1	D	410	415	Right-handed 310
Helix 92	AK2	D	419	433	Right-handed alpha
Helix 93	AK3	D	436	451	Right-handed alpha
Helix 94	AK4	D	452	467	Right-handed alpha
Helix 95	AK5	D	470	487	Right-handed alpha
Helix 96	AK6	D	490	510	Right-handed alpha
Helix 97	AK7	D	512	524	Right-handed alpha
Helix 98	AK8	D	536	539	Right-handed 310
Helix 99	AK9	D	540	549	Right-handed alpha

There are 16 sheets in PDB entry 5EZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	85	90	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	232	239	parallel
Strand 3	A	207	210	parallel
Strand 4	A	216	226	anti-parallel
Strand 5	A	276	289	anti-parallel
Strand 6	A	260	265	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	191	first strand
Strand 2	A	232	239	parallel
Strand 3	A	242	249	anti-parallel
Strand 4	A	276	289	anti-parallel
Strand 5	A	260	265	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	337	338	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	85	90	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	232	239	parallel
Strand 3	B	207	210	parallel
Strand 4	B	216	226	anti-parallel
Strand 5	B	276	289	anti-parallel
Strand 6	B	260	265	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	191	first strand
Strand 2	B	232	239	parallel
Strand 3	B	242	249	anti-parallel
Strand 4	B	276	289	anti-parallel
Strand 5	B	260	265	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	337	338	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	85	90	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	232	239	parallel
Strand 3	C	207	210	parallel
Strand 4	C	216	226	anti-parallel
Strand 5	C	276	289	anti-parallel
Strand 6	C	260	265	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	191	first strand
Strand 2	C	232	239	parallel
Strand 3	C	242	249	anti-parallel
Strand 4	C	276	289	anti-parallel
Strand 5	C	260	265	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	337	338	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	79	first strand
Strand 2	D	85	90	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	232	239	parallel
Strand 3	D	207	210	parallel
Strand 4	D	216	226	anti-parallel
Strand 5	D	276	289	anti-parallel
Strand 6	D	260	265	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	191	first strand
Strand 2	D	232	239	parallel
Strand 3	D	242	249	anti-parallel
Strand 4	D	276	289	anti-parallel
Strand 5	D	260	265	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	334	first strand
Strand 2	D	337	338	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EZ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EZ3