Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 5EZE entry
There are 14 chains in PDB entry 5EZE
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
GLY 2 | GLU 17 |
A
|
ALA 19 | LEU 29 |
B
|
GLY 2 | GLU 17 |
B
|
ALA 19 | GLU 24 |
C
|
GLY 2 | GLU 17 |
C
|
ALA 19 | ALA 28 |
D
|
GLY 2 | GLU 17 |
D
|
ALA 19 | ARG 23 |
E
|
GLY 2 | GLU 17 |
E
|
ALA 19 | ALA 28 |
F
|
GLY 2 | GLU 17 |
F
|
ALA 19 | LEU 29 |
G
|
GLY 2 | GLU 17 |
G
|
ALA 19 | ARG 30 |
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There are 7
helices in PDB entry 5EZE. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 2 |
29 | Right-handed alpha |
| Helix 2 |
AA2 | B
| 2 |
24 | Right-handed alpha |
| Helix 3 |
AA3 | C
| 2 |
28 | Right-handed alpha |
| Helix 4 |
AA4 | D
| 2 |
22 | Right-handed alpha |
| Helix 5 |
AA5 | E
| 2 |
28 | Right-handed alpha |
| Helix 6 |
AA6 | F
| 2 |
29 | Right-handed alpha |
| Helix 7 |
AA7 | G
| 2 |
29 | Right-handed alpha |
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There are no sheets in PDB entry
5EZE
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il