Analysis of interatomic Contacts of Structural Units in PDB entry:
5EZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EZO entry

There are 3 chains in PDB entry 5EZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 ASN 19THR 240
L
 SER 21GLU 233
A
 ARG 31ASN 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5EZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
46 50Right-handed 310
Helix 2
AA2
H
80 83Right-handed 310
Helix 3
AA3
H
105 109Right-handed 310
Helix 4
AA4
H
224 227Right-handed 310
Helix 5
AA5
L
99 103Right-handed 310
Helix 6
AA6
L
143 147Right-handed 310
Helix 7
AA7
L
203 208Right-handed alpha
Helix 8
AA8
A
94 97Right-handed 310
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There are 15 sheets in PDB entry 5EZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
21 25first strand
Strand 2
H
35 43anti-parallel
Strand 3
H
96 102anti-parallel
Strand 4
H
87 91anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 30first strand
Strand 2
H
131 135parallel
Strand 3
H
110 117anti-parallel
Strand 4
H
52 57anti-parallel
Strand 5
H
63 69anti-parallel
Strand 6
H
76 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 30first strand
Strand 2
H
131 135parallel
Strand 3
H
110 117anti-parallel
Strand 4
H
124 127anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 148first strand
Strand 2
H
159 169anti-parallel
Strand 3
H
198 208anti-parallel
Strand 4
H
187 189anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
144 148first strand
Strand 2
H
159 169anti-parallel
Strand 3
H
198 208anti-parallel
Strand 4
H
193 195anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
175 178first strand
Strand 2
H
218 223anti-parallel
Strand 3
H
228 233anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
24 27first strand
Strand 2
L
39 45anti-parallel
Strand 3
L
90 95anti-parallel
Strand 4
L
82 87anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 33first strand
Strand 2
L
122 126parallel
Strand 3
L
104 110anti-parallel
Strand 4
L
53 58anti-parallel
Strand 5
L
65 69anti-parallel
Strand 6
L
73 74anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
134 138first strand
Strand 2
L
149 159anti-parallel
Strand 3
L
193 202anti-parallel
Strand 4
L
179 183anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
173 174first strand
Strand 2
L
165 170anti-parallel
Strand 3
L
211 218anti-parallel
Strand 4
L
221 230anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 43first strand
Strand 2
A
350 359anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
331 334anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
86 92anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 151first strand
Strand 2
A
131 138anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
164 166parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
210 216anti-parallel
Strand 5
A
265 271parallel
Strand 6
A
252 262anti-parallel
Strand 7
A
236 243anti-parallel
Strand 8
A
225 233anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 286first strand
Strand 2
A
289 295anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
311 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il