Analysis of interatomic Contacts of Structural Units in PDB entry:
5F0A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F0A entry

There is 1 chain in PDB entry 5F0A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	PHE 846

There are 35 helices in PDB entry 5F0A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	28	Right-handed alpha
Helix 2	AA2	A	35	48	Right-handed alpha
Helix 3	AA3	A	56	67	Right-handed alpha
Helix 4	AA4	A	116	120	Right-handed 310
Helix 5	AA5	A	142	167	Right-handed alpha
Helix 6	AA6	A	168	171	Right-handed 310
Helix 7	AA7	A	174	183	Right-handed alpha
Helix 8	AA8	A	234	238	Right-handed 310
Helix 9	AA9	A	260	267	Right-handed alpha
Helix 10	AB1	A	269	284	Right-handed alpha
Helix 11	AB2	A	288	292	Right-handed 310
Helix 12	AB3	A	293	304	Right-handed alpha
Helix 13	AB4	A	353	359	Right-handed alpha
Helix 14	AB5	A	381	389	Right-handed alpha
Helix 15	AB6	A	392	407	Right-handed alpha
Helix 16	AB7	A	409	414	Right-handed alpha
Helix 17	AB8	A	416	426	Right-handed alpha
Helix 18	AB9	A	475	480	Right-handed 310
Helix 19	AC1	A	503	510	Right-handed alpha
Helix 20	AC2	A	511	527	Right-handed alpha
Helix 21	AC3	A	530	532	Right-handed 310
Helix 22	AC4	A	567	573	Right-handed alpha
Helix 23	AC5	A	576	589	Right-handed alpha
Helix 24	AC6	A	618	627	Right-handed alpha
Helix 25	AC7	A	630	651	Right-handed alpha
Helix 26	AC8	A	659	661	Right-handed 310
Helix 27	AC9	A	692	696	Right-handed 310
Helix 28	AD1	A	697	702	Right-handed alpha
Helix 29	AD2	A	708	724	Right-handed alpha
Helix 30	AD3	A	735	746	Right-handed alpha
Helix 31	AD4	A	756	767	Right-handed alpha
Helix 32	AD5	A	770	774	Right-handed 310
Helix 33	AD6	A	782	787	Right-handed alpha
Helix 34	AD7	A	788	792	Right-handed 310
Helix 35	AD8	A	795	801	Right-handed alpha

There are 11 sheets in PDB entry 5F0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	135	141	anti-parallel
Strand 4	A	87	93	anti-parallel
Strand 5	A	113	114	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	128	131	anti-parallel
Strand 3	A	96	99	anti-parallel
Strand 4	A	104	108	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	190	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	205	211	anti-parallel
Strand 4	A	231	232	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	246	249	anti-parallel
Strand 3	A	214	218	anti-parallel
Strand 4	A	221	226	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	351	352	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	366	370	anti-parallel
Strand 3	A	334	338	anti-parallel
Strand 4	A	341	346	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	496	502	anti-parallel
Strand 3	A	447	453	anti-parallel
Strand 4	A	473	474	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	488	491	anti-parallel
Strand 3	A	455	460	anti-parallel
Strand 4	A	463	469	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	542	first strand
Strand 2	A	546	553	anti-parallel
Strand 3	A	559	566	anti-parallel
Strand 4	A	606	612	anti-parallel
Strand 5	A	597	599	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	680	681	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	665	first strand
Strand 2	A	671	673	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F0A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F0A