Analysis of interatomic Contacts of Structural Units in PDB entry:
5F11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F11 entry

There is 1 chain in PDB entry 5F11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 16GLU 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5F11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 57Right-handed alpha
Helix 2
AA2
A
70 83Right-handed alpha
Helix 3
AA3
A
108 111Right-handed 310
Helix 4
AA4
A
120 125Right-handed 310
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
144 147Right-handed 310
Helix 7
AA7
A
150 166Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
182 184Right-handed 310
Helix 10
AB1
A
185 195Right-handed alpha
Helix 11
AB2
A
204 211Right-handed alpha
Helix 12
AB3
A
215 222Right-handed alpha
Helix 13
AB4
A
223 227Right-handed 310
Helix 14
AB5
A
236 238Right-handed 310
Helix 15
AB6
A
263 278Right-handed alpha
Helix 16
AB7
A
284 302Right-handed alpha
Helix 17
AB8
A
303 305Right-handed 310
Helix 18
AB9
A
314 323Right-handed alpha
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There are 2 sheets in PDB entry 5F11. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 93first strand
Strand 2
A
61 68parallel
Strand 3
A
21 24parallel
Strand 4
A
138 142parallel
Strand 5
A
168 172parallel
Strand 6
A
199 203parallel
Strand 7
A
230 234parallel
Strand 8
A
240 244anti-parallel
Strand 9
A
247 251anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
99 103parallel
Strand 4
A
113 115anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il