Analysis of interatomic Contacts of Structural Units in PDB entry:
5F13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F13 entry

There are 2 chains in PDB entry 5F13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ILE 468
B
 ILE 3ALA 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 5F13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 40Right-handed alpha
Helix 2
AA2
A
46 68Right-handed alpha
Helix 3
AA3
A
76 84Right-handed alpha
Helix 4
AA4
A
87 96Right-handed alpha
Helix 5
AA5
A
105 123Right-handed alpha
Helix 6
AA6
A
124 128Right-handed 310
Helix 7
AA7
A
133 143Right-handed alpha
Helix 8
AA8
A
144 166Right-handed alpha
Helix 9
AA9
A
172 190Right-handed alpha
Helix 10
AB1
A
210 222Right-handed alpha
Helix 11
AB2
A
227 241Right-handed alpha
Helix 12
AB3
A
257 273Right-handed alpha
Helix 13
AB4
A
295 307Right-handed alpha
Helix 14
AB5
A
318 337Right-handed alpha
Helix 15
AB6
A
346 350Right-handed 310
Helix 16
AB7
A
353 357Right-handed 310
Helix 17
AB8
A
365 374Right-handed alpha
Helix 18
AB9
A
383 391Right-handed alpha
Helix 19
AC1
A
401 406Right-handed alpha
Helix 20
AC2
A
407 411Right-handed 310
Helix 21
AC3
A
433 443Right-handed alpha
Helix 22
AC4
A
449 456Right-handed 310
Helix 23
AC5
B
14 40Right-handed alpha
Helix 24
AC6
B
46 69Right-handed alpha
Helix 25
AC7
B
76 84Right-handed alpha
Helix 26
AC8
B
87 96Right-handed alpha
Helix 27
AC9
B
105 123Right-handed alpha
Helix 28
AD1
B
124 128Right-handed 310
Helix 29
AD2
B
133 143Right-handed alpha
Helix 30
AD3
B
144 168Right-handed alpha
Helix 31
AD4
B
170 191Right-handed alpha
Helix 32
AD5
B
209 222Right-handed alpha
Helix 33
AD6
B
227 239Right-handed alpha
Helix 34
AD7
B
257 274Right-handed alpha
Helix 35
AD8
B
294 307Right-handed alpha
Helix 36
AD9
B
318 337Right-handed alpha
Helix 37
AE1
B
346 350Right-handed 310
Helix 38
AE2
B
353 357Right-handed 310
Helix 39
AE3
B
365 374Right-handed alpha
Helix 40
AE4
B
383 391Right-handed alpha
Helix 41
AE5
B
401 406Right-handed alpha
Helix 42
AE6
B
407 411Right-handed 310
Helix 43
AE7
B
433 443Right-handed alpha
Helix 44
AE8
B
449 456Right-handed 310
Helix 45
AE9
C
14 40Right-handed alpha
Helix 46
AF1
C
47 68Right-handed alpha
Helix 47
AF2
C
76 84Right-handed alpha
Helix 48
AF3
C
87 96Right-handed alpha
Helix 49
AF4
C
105 124Right-handed alpha
Helix 50
AF5
C
125 128Right-handed 310
Helix 51
AF6
C
133 143Right-handed alpha
Helix 52
AF7
C
144 167Right-handed alpha
Helix 53
AF8
C
175 191Right-handed alpha
Helix 54
AF9
C
204 209Right-handed alpha
Helix 55
AG1
C
209 222Right-handed alpha
Helix 56
AG2
C
227 240Right-handed alpha
Helix 57
AG3
C
257 273Right-handed alpha
Helix 58
AG4
C
295 307Right-handed alpha
Helix 59
AG5
C
318 337Right-handed alpha
Helix 60
AG6
C
346 350Right-handed 310
Helix 61
AG7
C
353 357Right-handed 310
Helix 62
AG8
C
365 375Right-handed alpha
Helix 63
AG9
C
383 392Right-handed alpha
Helix 64
AH1
C
401 406Right-handed alpha
Helix 65
AH2
C
407 411Right-handed 310
Helix 66
AH3
C
433 443Right-handed alpha
Helix 67
AH4
C
449 456Right-handed 310
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There are 3 sheets in PDB entry 5F13. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
460 465parallel
Strand 3
A
416 421anti-parallel
Strand 4
A
378 382parallel
Strand 5
A
248 252parallel
Strand 6
A
278 283parallel
Strand 7
A
340 344parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
460 465parallel
Strand 3
B
416 421anti-parallel
Strand 4
B
378 382parallel
Strand 5
B
248 252parallel
Strand 6
B
278 283parallel
Strand 7
B
340 344parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 226first strand
Strand 2
C
460 465parallel
Strand 3
C
416 421anti-parallel
Strand 4
C
378 382parallel
Strand 5
C
248 252parallel
Strand 6
C
278 283parallel
Strand 7
C
340 344parallel
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