Analysis of interatomic Contacts of Structural Units in PDB entry:
5F17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F17 entry

There are 6 chains in PDB entry 5F17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLU 219
B	SER 1	GLU 219
C	SER 1	GLU 219
D	SER 1	GLU 219
E	SER 1	GLU 219
F	SER 1	GLU 219

There are 29 helices in PDB entry 5F17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	14	Right-handed alpha
Helix 2	AA2	A	103	108	Right-handed alpha
Helix 3	AA3	A	114	124	Right-handed alpha
Helix 4	AA4	A	124	129	Right-handed alpha
Helix 5	AA5	A	179	187	Right-handed 310
Helix 6	AA6	B	8	14	Right-handed alpha
Helix 7	AA7	B	114	124	Right-handed alpha
Helix 8	AA8	B	124	129	Right-handed alpha
Helix 9	AA9	B	179	184	Right-handed 310
Helix 10	AB1	C	7	13	Right-handed alpha
Helix 11	AB2	C	29	36	Right-handed alpha
Helix 12	AB3	C	103	108	Right-handed alpha
Helix 13	AB4	C	114	124	Right-handed alpha
Helix 14	AB5	C	179	184	Right-handed 310
Helix 15	AB6	D	7	13	Right-handed alpha
Helix 16	AB7	D	29	36	Right-handed 310
Helix 17	AB8	D	103	108	Right-handed alpha
Helix 18	AB9	D	114	124	Right-handed alpha
Helix 19	AC1	D	179	184	Right-handed 310
Helix 20	AC2	E	8	14	Right-handed alpha
Helix 21	AC3	E	30	36	Right-handed 310
Helix 22	AC4	E	104	108	Right-handed 310
Helix 23	AC5	E	114	124	Right-handed alpha
Helix 24	AC6	E	179	184	Right-handed 310
Helix 25	AC7	F	7	13	Right-handed alpha
Helix 26	AC8	F	29	36	Right-handed 310
Helix 27	AC9	F	104	108	Right-handed 310
Helix 28	AD1	F	114	124	Right-handed alpha
Helix 29	AD2	F	179	187	Right-handed 310

There are 36 sheets in PDB entry 5F17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	66	68	anti-parallel
Strand 3	A	71	73	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	46	51	parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	60	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	46	51	parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	91	93	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	137	138	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	164	first strand
Strand 2	A	168	176	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	200	first strand
Strand 2	A	203	210	anti-parallel
Strand 3	A	214	218	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	66	68	anti-parallel
Strand 3	B	71	73	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	47	51	parallel
Strand 3	B	82	88	anti-parallel
Strand 4	B	60	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	47	51	parallel
Strand 3	B	82	88	anti-parallel
Strand 4	B	91	93	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	137	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	164	first strand
Strand 2	B	168	176	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	203	210	anti-parallel
Strand 3	B	214	218	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	66	68	anti-parallel
Strand 3	C	71	73	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	47	51	parallel
Strand 3	C	83	88	anti-parallel
Strand 4	C	60	61	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	47	51	parallel
Strand 3	C	83	88	anti-parallel
Strand 4	C	91	92	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	137	138	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	164	first strand
Strand 2	C	168	176	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	200	first strand
Strand 2	C	203	210	anti-parallel
Strand 3	C	214	218	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	6	first strand
Strand 2	D	66	68	anti-parallel
Strand 3	D	71	73	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	26	27	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	47	51	parallel
Strand 3	D	83	88	anti-parallel
Strand 4	D	60	61	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	47	51	parallel
Strand 3	D	83	88	anti-parallel
Strand 4	D	91	93	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	138	first strand
Strand 2	D	131	132	anti-parallel
Strand 3	D	215	218	parallel
Strand 4	D	203	210	anti-parallel
Strand 5	D	193	200	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	142	first strand
Strand 2	D	174	176	parallel
Strand 3	D	157	158	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	66	68	anti-parallel
Strand 3	E	71	73	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	19	first strand
Strand 2	E	26	27	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	47	51	parallel
Strand 3	E	82	88	anti-parallel
Strand 4	E	60	62	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	39	40	first strand
Strand 2	E	47	51	parallel
Strand 3	E	82	88	anti-parallel
Strand 4	E	91	93	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	174	176	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	200	first strand
Strand 2	E	203	210	anti-parallel
Strand 3	E	214	217	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	66	68	anti-parallel
Strand 3	F	71	73	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	26	27	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	47	51	parallel
Strand 3	F	82	88	anti-parallel
Strand 4	F	60	62	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	47	51	parallel
Strand 3	F	82	88	anti-parallel
Strand 4	F	91	93	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	142	first strand
Strand 2	F	175	176	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	193	200	first strand
Strand 2	F	203	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F17

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F17