Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F1C entry

There are 3 chains in PDB entry 5F1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 30	LEU 372
B	GLY 19	ASN 373
C	VAL 29	LEU 372

There are 28 helices in PDB entry 5F1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	45	Right-handed alpha
Helix 2	AA2	A	77	81	Right-handed 310
Helix 3	AA3	A	97	101	Right-handed alpha
Helix 4	AA4	A	199	204	Right-handed 310
Helix 5	AA5	A	232	237	Right-handed alpha
Helix 6	AA6	A	252	259	Right-handed alpha
Helix 7	AA7	A	262	270	Right-handed alpha
Helix 8	AA8	A	345	361	Right-handed alpha
Helix 9	AA9	A	362	370	Right-handed alpha
Helix 10	AB1	B	20	45	Right-handed alpha
Helix 11	AB2	B	77	81	Right-handed 310
Helix 12	AB3	B	97	101	Right-handed alpha
Helix 13	AB4	B	199	204	Right-handed 310
Helix 14	AB5	B	232	237	Right-handed alpha
Helix 15	AB6	B	252	258	Right-handed alpha
Helix 16	AB7	B	262	270	Right-handed alpha
Helix 17	AB8	B	345	361	Right-handed alpha
Helix 18	AB9	B	362	369	Right-handed alpha
Helix 19	AC1	C	30	45	Right-handed alpha
Helix 20	AC2	C	77	81	Right-handed 310
Helix 21	AC3	C	88	92	Right-handed 310
Helix 22	AC4	C	97	101	Right-handed alpha
Helix 23	AC5	C	199	204	Right-handed 310
Helix 24	AC6	C	232	237	Right-handed alpha
Helix 25	AC7	C	252	259	Right-handed alpha
Helix 26	AC8	C	262	270	Right-handed alpha
Helix 27	AC9	C	345	361	Right-handed alpha
Helix 28	AD1	C	362	370	Right-handed alpha

There are 18 sheets in PDB entry 5F1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	343	344	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	68	first strand
Strand 2	A	206	215	anti-parallel
Strand 3	A	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	68	first strand
Strand 2	A	206	215	anti-parallel
Strand 3	A	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	166	first strand
Strand 2	A	175	183	anti-parallel
Strand 3	A	109	128	anti-parallel
Strand 4	A	322	340	anti-parallel
Strand 5	A	271	280	parallel
Strand 6	A	293	298	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	166	first strand
Strand 2	A	175	183	anti-parallel
Strand 3	A	109	128	anti-parallel
Strand 4	A	322	340	anti-parallel
Strand 5	A	311	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	343	344	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	68	first strand
Strand 2	B	206	215	anti-parallel
Strand 3	B	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	68	first strand
Strand 2	B	206	215	anti-parallel
Strand 3	B	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	166	first strand
Strand 2	B	175	183	anti-parallel
Strand 3	B	109	128	anti-parallel
Strand 4	B	322	340	anti-parallel
Strand 5	B	271	280	parallel
Strand 6	B	293	298	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	166	first strand
Strand 2	B	175	183	anti-parallel
Strand 3	B	109	128	anti-parallel
Strand 4	B	322	340	anti-parallel
Strand 5	B	311	317	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	343	344	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	68	first strand
Strand 2	C	206	215	anti-parallel
Strand 3	C	220	223	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	68	first strand
Strand 2	C	206	215	anti-parallel
Strand 3	C	249	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	166	first strand
Strand 2	C	175	183	anti-parallel
Strand 3	C	109	128	anti-parallel
Strand 4	C	322	340	anti-parallel
Strand 5	C	271	280	parallel
Strand 6	C	293	298	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	166	first strand
Strand 2	C	175	183	anti-parallel
Strand 3	C	109	128	anti-parallel
Strand 4	C	322	340	anti-parallel
Strand 5	C	311	317	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1C