Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F1P entry

There are 2 chains in PDB entry 5F1P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LEU 249
B
 VAL 1LEU 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5F1P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 52Right-handed alpha
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
104 108Right-handed 310
Helix 6
AA6
A
109 121Right-handed alpha
Helix 7
AA7
A
121 138Right-handed alpha
Helix 8
AA8
A
158 180Right-handed alpha
Helix 9
AA9
A
204 211Right-handed 310
Helix 10
AB1
A
218 231Right-handed alpha
Helix 11
AB2
A
232 235Right-handed 310
Helix 12
AB3
B
16 29Right-handed alpha
Helix 13
AB4
B
39 52Right-handed alpha
Helix 14
AB5
B
67 83Right-handed alpha
Helix 15
AB6
B
96 101Right-handed alpha
Helix 16
AB7
B
109 121Right-handed alpha
Helix 17
AB8
B
121 138Right-handed alpha
Helix 18
AB9
B
153 157Right-handed 310
Helix 19
AC1
B
158 180Right-handed alpha
Helix 20
AC2
B
200 208Right-handed 310
Helix 21
AC3
B
218 231Right-handed alpha
Helix 22
AC4
B
232 235Right-handed 310
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There are 2 sheets in PDB entry 5F1P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
87 91parallel
Strand 5
A
141 146parallel
Strand 6
A
184 191parallel
Strand 7
A
241 244parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
87 91parallel
Strand 5
B
141 146parallel
Strand 6
B
184 191parallel
Strand 7
B
241 244parallel
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