Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F1Q entry

There are 2 chains in PDB entry 5F1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 29	TYR 541
B	LYS 29	ASP 535

There are 46 helices in PDB entry 5F1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	47	Right-handed 310
Helix 2	AA2	A	49	56	Right-handed alpha
Helix 3	AA3	A	56	61	Right-handed alpha
Helix 4	AA4	A	114	127	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	140	146	Right-handed alpha
Helix 7	AA7	A	147	151	Right-handed alpha
Helix 8	AA8	A	173	178	Right-handed alpha
Helix 9	AA9	A	179	184	Right-handed 310
Helix 10	AB1	A	187	197	Right-handed alpha
Helix 11	AB2	A	201	206	Right-handed alpha
Helix 12	AB3	A	249	259	Right-handed alpha
Helix 13	AB4	A	269	271	Right-handed 310
Helix 14	AB5	A	272	278	Right-handed alpha
Helix 15	AB6	A	306	316	Right-handed alpha
Helix 16	AB7	A	318	326	Right-handed alpha
Helix 17	AB8	A	355	366	Right-handed alpha
Helix 18	AB9	A	388	402	Right-handed alpha
Helix 19	AC1	A	413	423	Right-handed alpha
Helix 20	AC2	A	440	449	Right-handed alpha
Helix 21	AC3	A	449	456	Right-handed alpha
Helix 22	AC4	A	464	477	Right-handed alpha
Helix 23	AC5	A	479	498	Right-handed alpha
Helix 24	AC6	B	43	47	Right-handed 310
Helix 25	AC7	B	49	56	Right-handed alpha
Helix 26	AC8	B	56	61	Right-handed alpha
Helix 27	AC9	B	114	127	Right-handed alpha
Helix 28	AD1	B	134	138	Right-handed 310
Helix 29	AD2	B	140	146	Right-handed alpha
Helix 30	AD3	B	147	151	Right-handed alpha
Helix 31	AD4	B	173	178	Right-handed alpha
Helix 32	AD5	B	179	184	Right-handed 310
Helix 33	AD6	B	187	197	Right-handed alpha
Helix 34	AD7	B	201	206	Right-handed alpha
Helix 35	AD8	B	249	259	Right-handed alpha
Helix 36	AD9	B	269	271	Right-handed 310
Helix 37	AE1	B	272	278	Right-handed alpha
Helix 38	AE2	B	306	316	Right-handed alpha
Helix 39	AE3	B	318	326	Right-handed alpha
Helix 40	AE4	B	355	366	Right-handed alpha
Helix 41	AE5	B	388	402	Right-handed alpha
Helix 42	AE6	B	413	423	Right-handed alpha
Helix 43	AE7	B	440	449	Right-handed alpha
Helix 44	AE8	B	449	455	Right-handed alpha
Helix 45	AE9	B	464	477	Right-handed alpha
Helix 46	AF1	B	479	498	Right-handed alpha

There are 12 sheets in PDB entry 5F1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	35	first strand
Strand 2	A	241	246	parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	213	219	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	74	76	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	152	159	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	288	first strand
Strand 2	A	500	513	anti-parallel
Strand 3	A	331	333	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	288	first strand
Strand 2	A	500	513	anti-parallel
Strand 3	A	291	297	anti-parallel
Strand 4	A	428	434	anti-parallel
Strand 5	A	372	377	parallel
Strand 6	A	405	410	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	533	534	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	241	246	parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	213	219	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	74	76	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	162	167	anti-parallel
Strand 4	B	152	159	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	287	first strand
Strand 2	B	508	513	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	500	506	anti-parallel
Strand 3	B	291	297	anti-parallel
Strand 4	B	428	434	anti-parallel
Strand 5	B	372	377	parallel
Strand 6	B	405	410	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	533	534	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1Q