Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F1V entry

There are 8 chains in PDB entry 5F1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	VAL 165
A	GLU 167	PHE 298
B	ASP 2	VAL 165
B	GLU 167	PHE 298
C	LYS 3	VAL 165
C	GLU 167	PHE 298
D	ASN 4	VAL 165
D	GLU 167	PHE 298

There are 61 helices in PDB entry 5F1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	37	Right-handed alpha
Helix 2	AA2	A	55	71	Right-handed alpha
Helix 3	AA3	A	85	99	Right-handed alpha
Helix 4	AA4	A	115	130	Right-handed alpha
Helix 5	AA5	A	139	144	Right-handed alpha
Helix 6	AA6	A	148	159	Right-handed alpha
Helix 7	AA7	A	171	182	Right-handed alpha
Helix 8	AA8	A	191	193	Right-handed 310
Helix 9	AA9	A	194	201	Right-handed alpha
Helix 10	AB1	A	209	213	Right-handed 310
Helix 11	AB2	A	214	227	Right-handed alpha
Helix 12	AB3	A	229	240	Right-handed alpha
Helix 13	AB4	A	240	247	Right-handed alpha
Helix 14	AB5	A	253	263	Right-handed alpha
Helix 15	AB6	A	279	291	Right-handed alpha
Helix 16	AB7	B	23	37	Right-handed alpha
Helix 17	AB8	B	50	54	Right-handed 310
Helix 18	AB9	B	55	71	Right-handed alpha
Helix 19	AC1	B	85	99	Right-handed alpha
Helix 20	AC2	B	115	130	Right-handed alpha
Helix 21	AC3	B	139	144	Right-handed alpha
Helix 22	AC4	B	148	159	Right-handed alpha
Helix 23	AC5	B	171	182	Right-handed alpha
Helix 24	AC6	B	191	193	Right-handed 310
Helix 25	AC7	B	194	201	Right-handed alpha
Helix 26	AC8	B	209	213	Right-handed 310
Helix 27	AC9	B	214	227	Right-handed alpha
Helix 28	AD1	B	229	247	Right-handed alpha
Helix 29	AD2	B	253	263	Right-handed alpha
Helix 30	AD3	B	279	291	Right-handed alpha
Helix 31	AD4	C	23	37	Right-handed alpha
Helix 32	AD5	C	50	54	Right-handed 310
Helix 33	AD6	C	55	71	Right-handed alpha
Helix 34	AD7	C	85	99	Right-handed alpha
Helix 35	AD8	C	115	128	Right-handed alpha
Helix 36	AD9	C	139	144	Right-handed alpha
Helix 37	AE1	C	148	159	Right-handed alpha
Helix 38	AE2	C	171	182	Right-handed alpha
Helix 39	AE3	C	191	193	Right-handed 310
Helix 40	AE4	C	194	201	Right-handed alpha
Helix 41	AE5	C	209	213	Right-handed 310
Helix 42	AE6	C	214	227	Right-handed alpha
Helix 43	AE7	C	229	240	Right-handed alpha
Helix 44	AE8	C	240	247	Right-handed alpha
Helix 45	AE9	C	253	263	Right-handed alpha
Helix 46	AF1	C	279	291	Right-handed alpha
Helix 47	AF2	D	23	37	Right-handed alpha
Helix 48	AF3	D	55	71	Right-handed alpha
Helix 49	AF4	D	85	99	Right-handed alpha
Helix 50	AF5	D	115	128	Right-handed alpha
Helix 51	AF6	D	139	144	Right-handed alpha
Helix 52	AF7	D	148	159	Right-handed alpha
Helix 53	AF8	D	171	182	Right-handed alpha
Helix 54	AF9	D	191	193	Right-handed 310
Helix 55	AG1	D	194	201	Right-handed alpha
Helix 56	AG2	D	209	213	Right-handed 310
Helix 57	AG3	D	214	227	Right-handed alpha
Helix 58	AG4	D	229	240	Right-handed alpha
Helix 59	AG5	D	240	247	Right-handed alpha
Helix 60	AG6	D	253	263	Right-handed alpha
Helix 61	AG7	D	279	291	Right-handed alpha

There are 8 sheets in PDB entry 5F1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	41	43	parallel
Strand 3	A	76	80	parallel
Strand 4	A	103	107	parallel
Strand 5	A	134	138	parallel
Strand 6	A	162	167	parallel
Strand 7	A	186	189	parallel
Strand 8	A	205	208	parallel
Strand 9	A	8	12	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	21	22	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	41	43	parallel
Strand 3	B	76	80	parallel
Strand 4	B	103	107	parallel
Strand 5	B	134	138	parallel
Strand 6	B	162	167	parallel
Strand 7	B	186	189	parallel
Strand 8	B	205	208	parallel
Strand 9	B	8	12	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	18	first strand
Strand 2	B	21	22	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	12	first strand
Strand 2	C	41	43	parallel
Strand 3	C	76	80	parallel
Strand 4	C	103	107	parallel
Strand 5	C	134	138	parallel
Strand 6	C	162	167	parallel
Strand 7	C	186	189	parallel
Strand 8	C	205	208	parallel
Strand 9	C	8	12	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	21	22	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	12	first strand
Strand 2	D	41	43	parallel
Strand 3	D	76	80	parallel
Strand 4	D	103	107	parallel
Strand 5	D	134	138	parallel
Strand 6	D	162	167	parallel
Strand 7	D	186	189	parallel
Strand 8	D	205	208	parallel
Strand 9	D	8	12	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	18	first strand
Strand 2	D	21	22	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1V