Analysis of interatomic Contacts of Structural Units in PDB entry:
5F1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F1Y entry

There are 2 chains in PDB entry 5F1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 343
B
 MSE 1GLU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5F1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
29 45Right-handed alpha
Helix 3
AA3
A
57 63Right-handed alpha
Helix 4
AA4
A
64 78Right-handed alpha
Helix 5
AA5
A
92 100Right-handed 310
Helix 6
AA6
A
101 107Right-handed alpha
Helix 7
AA7
A
115 117Right-handed 310
Helix 8
AA8
A
118 128Right-handed alpha
Helix 9
AA9
A
149 161Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
217 224Right-handed alpha
Helix 12
AB3
A
231 236Right-handed 310
Helix 13
AB4
A
250 264Right-handed alpha
Helix 14
AB5
A
265 270Right-handed alpha
Helix 15
AB6
A
278 282Right-handed 310
Helix 16
AB7
A
283 298Right-handed alpha
Helix 17
AB8
B
22 26Right-handed 310
Helix 18
AB9
B
29 43Right-handed alpha
Helix 19
AC1
B
57 64Right-handed alpha
Helix 20
AC2
B
64 78Right-handed alpha
Helix 21
AC3
B
92 100Right-handed 310
Helix 22
AC4
B
101 107Right-handed alpha
Helix 23
AC5
B
115 117Right-handed 310
Helix 24
AC6
B
118 128Right-handed alpha
Helix 25
AC7
B
149 161Right-handed alpha
Helix 26
AC8
B
183 187Right-handed 310
Helix 27
AC9
B
217 224Right-handed alpha
Helix 28
AD1
B
231 236Right-handed 310
Helix 29
AD2
B
250 264Right-handed alpha
Helix 30
AD3
B
278 282Right-handed 310
Helix 31
AD4
B
283 298Right-handed alpha
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There are 6 sheets in PDB entry 5F1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
13 17parallel
Strand 3
A
81 86parallel
Strand 4
A
111 114parallel
Strand 5
A
133 134parallel
Strand 6
A
320 321anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
334 337anti-parallel
Strand 3
A
325 329anti-parallel
Strand 4
A
208 216anti-parallel
Strand 5
A
238 243parallel
Strand 6
A
272 276parallel
Strand 7
A
305 309parallel
Strand 8
A
200 203anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
194 195anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
13 17parallel
Strand 3
B
81 86parallel
Strand 4
B
111 114parallel
Strand 5
B
133 134parallel
Strand 6
B
320 321anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
334 337anti-parallel
Strand 3
B
325 329anti-parallel
Strand 4
B
207 216anti-parallel
Strand 5
B
238 243parallel
Strand 6
B
272 276parallel
Strand 7
B
305 309parallel
Strand 8
B
200 203anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
194 195anti-parallel
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