Analysis of interatomic Contacts of Structural Units in PDB entry:
5F28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F28 entry

There are 7 chains in PDB entry 5F28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 21LYS 90
B
 VAL 19LYS 91
C
 THR 20LYS 91
D
 THR 20LYS 91
E
 LEU 917LYS 1044
F
 LEU 917LYS 1044
G
 ASN 916GLN 1048
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5F28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 39Right-handed alpha
Helix 2
AA2
A
61 71Right-handed alpha
Helix 3
AA3
A
80 89Right-handed alpha
Helix 4
AA4
B
20 39Right-handed alpha
Helix 5
AA5
B
61 71Right-handed alpha
Helix 6
AA6
B
81 88Right-handed alpha
Helix 7
AA7
C
21 40Right-handed alpha
Helix 8
AA8
C
61 71Right-handed alpha
Helix 9
AA9
C
80 89Right-handed alpha
Helix 10
AB1
D
21 39Right-handed alpha
Helix 11
AB2
D
61 71Right-handed alpha
Helix 12
AB3
D
80 89Right-handed alpha
Helix 13
AB4
E
922 943Right-handed alpha
Helix 14
AB5
E
946 948Right-handed 310
Helix 15
AB6
E
949 972Right-handed alpha
Helix 16
AB7
E
973 975Right-handed 310
Helix 17
AB8
E
976 978Right-handed 310
Helix 18
AB9
E
979 1005Right-handed alpha
Helix 19
AC1
E
1012 1043Right-handed alpha
Helix 20
AC2
F
922 943Right-handed alpha
Helix 21
AC3
F
949 972Right-handed alpha
Helix 22
AC4
F
973 975Right-handed 310
Helix 23
AC5
F
976 978Right-handed 310
Helix 24
AC6
F
979 1007Right-handed alpha
Helix 25
AC7
F
1012 1043Right-handed alpha
Helix 26
AC8
G
922 943Right-handed alpha
Helix 27
AC9
G
946 972Right-handed alpha
Helix 28
AD1
G
973 975Right-handed 310
Helix 29
AD2
G
976 978Right-handed 310
Helix 30
AD3
G
979 1007Right-handed alpha
Helix 31
AD4
G
1012 1046Right-handed alpha
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There are 2 sheets in PDB entry 5F28. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
B
54 58parallel
Strand 3
B
42 48anti-parallel
Strand 4
A
42 48anti-parallel
Strand 5
A
54 58anti-parallel
Strand 6
B
77 80parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 79first strand
Strand 2
D
54 58parallel
Strand 3
D
42 48anti-parallel
Strand 4
C
42 48anti-parallel
Strand 5
C
54 58anti-parallel
Strand 6
D
77 79parallel
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