Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F2K entry

There are 2 chains in PDB entry 5F2K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11ALA 368
B
 VAL 12ARG 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5F2K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 47Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
71 84Right-handed alpha
Helix 4
AA4
A
103 114Right-handed alpha
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
177 202Right-handed alpha
Helix 8
AA8
A
224 241Right-handed alpha
Helix 9
AA9
A
245 252Right-handed alpha
Helix 10
AB1
A
260 266Right-handed alpha
Helix 11
AB2
A
289 299Right-handed alpha
Helix 12
AB3
A
300 322Right-handed alpha
Helix 13
AB4
A
330 351Right-handed alpha
Helix 14
AB5
B
28 49Right-handed alpha
Helix 15
AB6
B
68 70Right-handed 310
Helix 16
AB7
B
71 84Right-handed alpha
Helix 17
AB8
B
103 114Right-handed alpha
Helix 18
AB9
B
117 121Right-handed 310
Helix 19
AC1
B
171 175Right-handed 310
Helix 20
AC2
B
177 202Right-handed alpha
Helix 21
AC3
B
224 241Right-handed alpha
Helix 22
AC4
B
245 252Right-handed alpha
Helix 23
AC5
B
260 266Right-handed alpha
Helix 24
AC6
B
289 299Right-handed alpha
Helix 25
AC7
B
300 322Right-handed alpha
Helix 26
AC8
B
330 351Right-handed alpha
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There are 2 sheets in PDB entry 5F2K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 131first strand
Strand 2
A
92 98parallel
Strand 3
A
58 63parallel
Strand 4
A
144 150parallel
Strand 5
A
203 214parallel
Strand 6
A
358 366anti-parallel
Strand 7
A
277 286anti-parallel
Strand 8
A
273 274anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 131first strand
Strand 2
B
92 98parallel
Strand 3
B
58 63parallel
Strand 4
B
144 150parallel
Strand 5
B
203 214parallel
Strand 6
B
358 366anti-parallel
Strand 7
B
277 286anti-parallel
Strand 8
B
273 274anti-parallel
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