Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F2M entry

There are 2 chains in PDB entry 5F2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3MET 326
B
 ILE 2LEU 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 5F2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
45 61Right-handed alpha
Helix 4
AA4
A
62 64Right-handed 310
Helix 5
AA5
A
74 79Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
135 157Right-handed alpha
Helix 8
AA8
A
176 195Right-handed alpha
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
211 215Right-handed 310
Helix 11
AB2
A
226 239Right-handed alpha
Helix 12
AB3
A
253 268Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
283 292Right-handed alpha
Helix 15
AB6
A
292 319Right-handed alpha
Helix 16
AB7
A
321 326Right-handed alpha
Helix 17
AB8
B
5 15Right-handed alpha
Helix 18
AB9
B
29 38Right-handed alpha
Helix 19
AC1
B
45 61Right-handed alpha
Helix 20
AC2
B
62 64Right-handed 310
Helix 21
AC3
B
74 80Right-handed alpha
Helix 22
AC4
B
112 119Right-handed alpha
Helix 23
AC5
B
135 157Right-handed alpha
Helix 24
AC6
B
176 195Right-handed alpha
Helix 25
AC7
B
196 200Right-handed 310
Helix 26
AC8
B
211 215Right-handed 310
Helix 27
AC9
B
226 239Right-handed alpha
Helix 28
AD1
B
253 268Right-handed alpha
Helix 29
AD2
B
277 282Right-handed alpha
Helix 30
AD3
B
283 292Right-handed alpha
Helix 31
AD4
B
292 317Right-handed alpha
Helix 32
AD5
B
321 325Right-handed 310
Helix 33
AD6
C
5 15Right-handed alpha
Helix 34
AD7
C
30 37Right-handed alpha
Helix 35
AD8
C
45 61Right-handed alpha
Helix 36
AD9
C
62 64Right-handed 310
Helix 37
AE1
C
70 80Right-handed alpha
Helix 38
AE2
C
112 119Right-handed alpha
Helix 39
AE3
C
135 157Right-handed alpha
Helix 40
AE4
C
176 195Right-handed alpha
Helix 41
AE5
C
196 200Right-handed 310
Helix 42
AE6
C
211 215Right-handed 310
Helix 43
AE7
C
226 239Right-handed alpha
Helix 44
AE8
C
253 268Right-handed alpha
Helix 45
AE9
C
277 282Right-handed alpha
Helix 46
AF1
C
283 291Right-handed alpha
Helix 47
AF2
C
292 319Right-handed alpha
Helix 48
AF3
C
321 326Right-handed 310
Helix 49
AF4
D
5 15Right-handed alpha
Helix 50
AF5
D
30 38Right-handed alpha
Helix 51
AF6
D
45 61Right-handed alpha
Helix 52
AF7
D
62 64Right-handed 310
Helix 53
AF8
D
74 80Right-handed alpha
Helix 54
AF9
D
112 119Right-handed alpha
Helix 55
AG1
D
135 157Right-handed alpha
Helix 56
AG2
D
176 195Right-handed alpha
Helix 57
AG3
D
196 200Right-handed 310
Helix 58
AG4
D
211 215Right-handed 310
Helix 59
AG5
D
226 239Right-handed alpha
Helix 60
AG6
D
253 268Right-handed alpha
Helix 61
AG7
D
277 282Right-handed alpha
Helix 62
AG8
D
283 292Right-handed alpha
Helix 63
AG9
D
292 319Right-handed alpha
Helix 64
AH1
D
321 326Right-handed 310
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There are 4 sheets in PDB entry 5F2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
66 69parallel
Strand 3
A
86 90parallel
Strand 4
A
123 130parallel
Strand 5
A
160 166parallel
Strand 6
A
203 206parallel
Strand 7
A
245 248parallel
Strand 8
A
273 276parallel
Strand 9
A
21 26parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
66 69parallel
Strand 3
B
86 90parallel
Strand 4
B
123 130parallel
Strand 5
B
160 166parallel
Strand 6
B
203 206parallel
Strand 7
B
245 247parallel
Strand 8
B
273 276parallel
Strand 9
B
21 26parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 25first strand
Strand 2
C
66 69parallel
Strand 3
C
86 90parallel
Strand 4
C
123 130parallel
Strand 5
C
160 166parallel
Strand 6
C
203 206parallel
Strand 7
C
245 247parallel
Strand 8
C
273 275parallel
Strand 9
C
21 25parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 25first strand
Strand 2
D
66 69parallel
Strand 3
D
86 90parallel
Strand 4
D
123 130parallel
Strand 5
D
160 166parallel
Strand 6
D
203 206parallel
Strand 7
D
245 248parallel
Strand 8
D
273 276parallel
Strand 9
D
21 25parallel
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