Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F2Q entry

There are 10 chains in PDB entry 5F2Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	PHE 135
B	ASN 1	PHE 135
C	ASN 1	PHE 135
D	ASN 2	PHE 135
E	ASN 1	PHE 135
F	ASN 2	PHE 135
G	ASN 2	PHE 135
H	ASN 2	PHE 135
I	ASN 1	PHE 135
J	ASN 2	PHE 135

There are 37 helices in PDB entry 5F2Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	35	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	99	102	Right-handed 310
Helix 4	AA4	A	111	114	Right-handed 310
Helix 5	AA5	B	23	35	Right-handed alpha
Helix 6	AA6	B	47	60	Right-handed alpha
Helix 7	AA7	B	99	102	Right-handed 310
Helix 8	AA8	B	111	114	Right-handed 310
Helix 9	AA9	C	23	35	Right-handed alpha
Helix 10	AB1	C	47	60	Right-handed alpha
Helix 11	AB2	C	99	103	Right-handed 310
Helix 12	AB3	D	23	35	Right-handed alpha
Helix 13	AB4	D	47	60	Right-handed alpha
Helix 14	AB5	D	99	103	Right-handed 310
Helix 15	AB6	D	111	114	Right-handed 310
Helix 16	AB7	E	23	35	Right-handed alpha
Helix 17	AB8	E	47	60	Right-handed alpha
Helix 18	AB9	E	99	102	Right-handed 310
Helix 19	AC1	E	111	114	Right-handed 310
Helix 20	AC2	F	23	35	Right-handed alpha
Helix 21	AC3	F	47	60	Right-handed alpha
Helix 22	AC4	F	99	102	Right-handed 310
Helix 23	AC5	F	111	114	Right-handed 310
Helix 24	AC6	G	23	35	Right-handed alpha
Helix 25	AC7	G	47	60	Right-handed alpha
Helix 26	AC8	G	99	103	Right-handed 310
Helix 27	AC9	G	111	114	Right-handed 310
Helix 28	AD1	H	23	33	Right-handed alpha
Helix 29	AD2	H	47	60	Right-handed alpha
Helix 30	AD3	H	111	114	Right-handed 310
Helix 31	AD4	I	23	33	Right-handed alpha
Helix 32	AD5	I	47	60	Right-handed alpha
Helix 33	AD6	I	99	102	Right-handed 310
Helix 34	AD7	I	111	114	Right-handed 310
Helix 35	AD8	J	23	35	Right-handed alpha
Helix 36	AD9	J	47	60	Right-handed alpha
Helix 37	AE1	J	111	114	Right-handed 310

There are 20 sheets in PDB entry 5F2Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	A	13	23	anti-parallel
Strand 3	A	126	133	anti-parallel
Strand 4	A	66	72	parallel
Strand 5	A	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	126	133	anti-parallel
Strand 3	A	66	72	parallel
Strand 4	A	104	109	anti-parallel
Strand 5	A	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	13	22	anti-parallel
Strand 3	B	127	133	anti-parallel
Strand 4	B	66	71	parallel
Strand 5	B	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	104	109	anti-parallel
Strand 5	B	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	C	13	22	anti-parallel
Strand 3	C	127	133	anti-parallel
Strand 4	C	66	72	parallel
Strand 5	C	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	127	133	anti-parallel
Strand 3	C	66	72	parallel
Strand 4	C	106	109	anti-parallel
Strand 5	C	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	D	13	22	anti-parallel
Strand 3	D	127	133	anti-parallel
Strand 4	D	66	71	parallel
Strand 5	D	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	127	133	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	106	109	anti-parallel
Strand 5	D	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	E	13	22	anti-parallel
Strand 3	E	127	133	anti-parallel
Strand 4	E	66	71	parallel
Strand 5	E	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	127	133	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	104	109	anti-parallel
Strand 5	E	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	13	22	anti-parallel
Strand 3	F	127	133	anti-parallel
Strand 4	F	66	72	parallel
Strand 5	F	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	127	133	anti-parallel
Strand 3	F	66	72	parallel
Strand 4	F	104	109	anti-parallel
Strand 5	F	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	10	first strand
Strand 2	G	13	22	anti-parallel
Strand 3	G	127	133	anti-parallel
Strand 4	G	66	71	parallel
Strand 5	G	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	127	133	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	106	109	anti-parallel
Strand 5	G	118	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	10	first strand
Strand 2	H	13	22	anti-parallel
Strand 3	H	127	133	anti-parallel
Strand 4	H	66	71	parallel
Strand 5	H	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	127	133	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	104	109	anti-parallel
Strand 5	H	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	8	10	first strand
Strand 2	I	13	22	anti-parallel
Strand 3	I	127	133	anti-parallel
Strand 4	I	66	71	parallel
Strand 5	I	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	38	40	first strand
Strand 2	I	127	133	anti-parallel
Strand 3	I	66	71	parallel
Strand 4	I	104	109	anti-parallel
Strand 5	I	118	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	8	10	first strand
Strand 2	J	13	22	anti-parallel
Strand 3	J	127	133	anti-parallel
Strand 4	J	66	71	parallel
Strand 5	J	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	38	40	first strand
Strand 2	J	127	133	anti-parallel
Strand 3	J	66	71	parallel
Strand 4	J	106	109	anti-parallel
Strand 5	J	118	121	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F2Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2Q