Analysis of interatomic Contacts of Structural Units in PDB entry:
5F2T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F2T entry

There are 2 chains in PDB entry 5F2T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48LEU 294
B
 ALA 41LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5F2T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 62Right-handed alpha
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
69 90Right-handed alpha
Helix 4
AA4
A
91 93Right-handed 310
Helix 5
AA5
A
94 102Right-handed alpha
Helix 6
AA6
A
107 116Right-handed alpha
Helix 7
AA7
A
129 141Right-handed alpha
Helix 8
AA8
A
153 167Right-handed alpha
Helix 9
AA9
A
180 191Right-handed alpha
Helix 10
AB1
A
221 231Right-handed alpha
Helix 11
AB2
A
260 279Right-handed alpha
Helix 12
AB3
A
280 283Right-handed 310
Helix 13
AB4
A
290 294Right-handed 310
Helix 14
AB5
B
42 46Right-handed alpha
Helix 15
AB6
B
49 62Right-handed alpha
Helix 16
AB7
B
64 68Right-handed 310
Helix 17
AB8
B
69 90Right-handed alpha
Helix 18
AB9
B
91 93Right-handed 310
Helix 19
AC1
B
94 102Right-handed alpha
Helix 20
AC2
B
107 116Right-handed alpha
Helix 21
AC3
B
129 141Right-handed alpha
Helix 22
AC4
B
153 166Right-handed alpha
Helix 23
AC5
B
180 191Right-handed alpha
Helix 24
AC6
B
221 231Right-handed alpha
Helix 25
AC7
B
260 279Right-handed alpha
Helix 26
AC8
B
280 283Right-handed 310
Helix 27
AC9
B
290 302Right-handed alpha
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There are 6 sheets in PDB entry 5F2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
120 124parallel
Strand 3
A
233 242parallel
Strand 4
A
245 250anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 148first strand
Strand 2
A
170 173parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
215 219anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 198first strand
Strand 2
B
120 124parallel
Strand 3
B
233 242parallel
Strand 4
B
245 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
B
170 173parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
215 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il