Analysis of interatomic Contacts of Structural Units in PDB entry:
5F37

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F37 entry

There are 4 chains in PDB entry 5F37 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	LEU 354
B	MET 1	LEU 354
C	GLU 6	LEU 354
D	SER 5	TYR 209

There are 71 helices in PDB entry 5F37. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	26	37	Right-handed alpha
Helix 3	AA3	A	38	42	Right-handed 310
Helix 4	AA4	A	94	102	Right-handed alpha
Helix 5	AA5	A	113	125	Right-handed alpha
Helix 6	AA6	A	149	153	Right-handed 310
Helix 7	AA7	A	155	157	Right-handed 310
Helix 8	AA8	A	158	165	Right-handed alpha
Helix 9	AA9	A	190	194	Right-handed 310
Helix 10	AB1	A	212	214	Right-handed 310
Helix 11	AB2	A	215	227	Right-handed alpha
Helix 12	AB3	A	227	234	Right-handed alpha
Helix 13	AB4	A	236	241	Right-handed 310
Helix 14	AB5	A	246	253	Right-handed alpha
Helix 15	AB6	A	295	303	Right-handed alpha
Helix 16	AB7	A	317	325	Right-handed alpha
Helix 17	AB8	A	328	334	Right-handed alpha
Helix 18	AB9	A	347	354	Right-handed 310
Helix 19	AC1	B	3	8	Right-handed alpha
Helix 20	AC2	B	20	25	Right-handed alpha
Helix 21	AC3	B	26	37	Right-handed alpha
Helix 22	AC4	B	38	42	Right-handed 310
Helix 23	AC5	B	94	102	Right-handed alpha
Helix 24	AC6	B	113	125	Right-handed alpha
Helix 25	AC7	B	155	157	Right-handed 310
Helix 26	AC8	B	158	165	Right-handed alpha
Helix 27	AC9	B	190	194	Right-handed 310
Helix 28	AD1	B	212	214	Right-handed 310
Helix 29	AD2	B	215	227	Right-handed alpha
Helix 30	AD3	B	227	234	Right-handed alpha
Helix 31	AD4	B	236	241	Right-handed 310
Helix 32	AD5	B	246	253	Right-handed alpha
Helix 33	AD6	B	295	303	Right-handed alpha
Helix 34	AD7	B	317	325	Right-handed alpha
Helix 35	AD8	B	328	334	Right-handed alpha
Helix 36	AD9	B	347	354	Right-handed 310
Helix 37	AE1	C	20	25	Right-handed alpha
Helix 38	AE2	C	26	37	Right-handed alpha
Helix 39	AE3	C	38	42	Right-handed 310
Helix 40	AE4	C	94	102	Right-handed alpha
Helix 41	AE5	C	113	125	Right-handed alpha
Helix 42	AE6	C	155	157	Right-handed 310
Helix 43	AE7	C	158	165	Right-handed alpha
Helix 44	AE8	C	190	194	Right-handed 310
Helix 45	AE9	C	212	214	Right-handed 310
Helix 46	AF1	C	215	227	Right-handed alpha
Helix 47	AF2	C	227	234	Right-handed alpha
Helix 48	AF3	C	236	241	Right-handed 310
Helix 49	AF4	C	246	253	Right-handed alpha
Helix 50	AF5	C	295	303	Right-handed alpha
Helix 51	AF6	C	317	325	Right-handed alpha
Helix 52	AF7	C	328	334	Right-handed alpha
Helix 53	AF8	C	347	354	Right-handed 310
Helix 54	AF9	D	20	25	Right-handed alpha
Helix 55	AG1	D	26	37	Right-handed alpha
Helix 56	AG2	D	38	42	Right-handed 310
Helix 57	AG3	D	94	102	Right-handed alpha
Helix 58	AG4	D	113	125	Right-handed alpha
Helix 59	AG5	D	149	153	Right-handed 310
Helix 60	AG6	D	155	157	Right-handed 310
Helix 61	AG7	D	158	165	Right-handed alpha
Helix 62	AG8	D	190	194	Right-handed 310
Helix 63	AG9	D	212	214	Right-handed 310
Helix 64	AH1	D	215	227	Right-handed alpha
Helix 65	AH2	D	227	234	Right-handed alpha
Helix 66	AH3	D	236	241	Right-handed 310
Helix 67	AH4	D	246	253	Right-handed alpha
Helix 68	AH5	D	295	303	Right-handed alpha
Helix 69	AH6	D	317	325	Right-handed alpha
Helix 70	AH7	D	328	334	Right-handed alpha
Helix 71	AH8	D	347	354	Right-handed 310

There are 12 sheets in PDB entry 5F37. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	44	47	parallel
Strand 3	A	267	270	anti-parallel
Strand 4	A	195	203	anti-parallel
Strand 5	A	284	291	anti-parallel
Strand 6	A	175	179	anti-parallel
Strand 7	A	131	137	anti-parallel
Strand 8	A	71	78	anti-parallel
Strand 9	A	81	88	anti-parallel
Strand 10	A	243	245	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	67	first strand
Strand 2	A	92	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	188	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	206	211	anti-parallel
Strand 4	A	258	262	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	44	47	parallel
Strand 3	B	267	270	anti-parallel
Strand 4	B	195	203	anti-parallel
Strand 5	B	284	291	anti-parallel
Strand 6	B	175	179	anti-parallel
Strand 7	B	131	137	anti-parallel
Strand 8	B	71	78	anti-parallel
Strand 9	B	81	88	anti-parallel
Strand 10	B	243	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	92	93	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	188	first strand
Strand 2	B	275	280	anti-parallel
Strand 3	B	206	211	anti-parallel
Strand 4	B	258	262	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	44	47	parallel
Strand 3	C	267	270	anti-parallel
Strand 4	C	195	203	anti-parallel
Strand 5	C	284	291	anti-parallel
Strand 6	C	175	179	anti-parallel
Strand 7	C	131	137	anti-parallel
Strand 8	C	71	78	anti-parallel
Strand 9	C	81	88	anti-parallel
Strand 10	C	243	245	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	92	93	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	188	first strand
Strand 2	C	275	280	anti-parallel
Strand 3	C	206	211	anti-parallel
Strand 4	C	258	262	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	44	47	parallel
Strand 3	D	267	270	anti-parallel
Strand 4	D	195	203	anti-parallel
Strand 5	D	284	291	anti-parallel
Strand 6	D	175	179	anti-parallel
Strand 7	D	131	137	anti-parallel
Strand 8	D	71	78	anti-parallel
Strand 9	D	81	88	anti-parallel
Strand 10	D	243	245	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	67	first strand
Strand 2	D	92	93	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	188	first strand
Strand 2	D	275	280	anti-parallel
Strand 3	D	206	211	anti-parallel
Strand 4	D	258	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F37

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F37