Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F3J entry

There are 4 chains in PDB entry 5F3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 219	SER 508
B	TYR 219	SER 508
C	ASP 40	VAL 287
D	ASP 40	THR 286

There are 24 helices in PDB entry 5F3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	239	244	Right-handed alpha
Helix 2	AA2	A	268	291	Right-handed alpha
Helix 3	AA3	A	296	316	Right-handed alpha
Helix 4	AA4	A	324	337	Right-handed alpha
Helix 5	AA5	A	341	360	Right-handed alpha
Helix 6	AA6	A	387	415	Right-handed alpha
Helix 7	AA7	A	429	462	Right-handed alpha
Helix 8	AA8	A	473	482	Right-handed alpha
Helix 9	AA9	A	486	495	Right-handed alpha
Helix 10	AB1	B	239	244	Right-handed alpha
Helix 11	AB2	B	268	291	Right-handed alpha
Helix 12	AB3	B	296	315	Right-handed alpha
Helix 13	AB4	B	324	337	Right-handed alpha
Helix 14	AB5	B	341	363	Right-handed alpha
Helix 15	AB6	B	388	415	Right-handed alpha
Helix 16	AB7	B	429	462	Right-handed alpha
Helix 17	AB8	B	474	482	Right-handed alpha
Helix 18	AB9	B	486	495	Right-handed alpha
Helix 19	AC1	B	500	506	Right-handed alpha
Helix 20	AC2	C	195	199	Right-handed 310
Helix 21	AC3	C	256	260	Right-handed 310
Helix 22	AC4	D	195	199	Right-handed 310
Helix 23	AC5	D	231	234	Right-handed 310
Helix 24	AC6	D	256	260	Right-handed 310

There are 12 sheets in PDB entry 5F3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	114	116	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	129	134	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	118	119	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	188	193	anti-parallel
Strand 3	C	247	252	anti-parallel
Strand 4	C	237	242	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	283	286	parallel
Strand 3	C	262	269	anti-parallel
Strand 4	C	201	208	anti-parallel
Strand 5	C	214	221	anti-parallel
Strand 6	C	226	229	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	283	286	parallel
Strand 3	C	262	269	anti-parallel
Strand 4	C	276	279	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	61	64	anti-parallel
Strand 3	D	114	116	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	92	first strand
Strand 2	D	77	82	anti-parallel
Strand 3	D	129	134	anti-parallel
Strand 4	D	141	142	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	118	119	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	187	193	anti-parallel
Strand 3	D	247	252	anti-parallel
Strand 4	D	237	242	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	283	286	parallel
Strand 3	D	262	269	anti-parallel
Strand 4	D	201	208	anti-parallel
Strand 5	D	214	221	anti-parallel
Strand 6	D	226	229	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	283	286	parallel
Strand 3	D	262	269	anti-parallel
Strand 4	D	276	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3J