Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F3W entry

There are 4 chains in PDB entry 5F3W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	ARG 365
B	MET 1	GLY 1005
C	MET 1	ARG 365
D	MET 1	GLU 162

There are 52 helices in PDB entry 5F3W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	17	Right-handed 310
Helix 2	AA2	A	18	40	Right-handed alpha
Helix 3	AA3	A	57	74	Right-handed alpha
Helix 4	AA4	A	95	101	Right-handed 310
Helix 5	AA5	A	129	131	Right-handed 310
Helix 6	AA6	A	132	146	Right-handed alpha
Helix 7	AA7	A	210	212	Right-handed 310
Helix 8	AA8	A	213	218	Right-handed alpha
Helix 9	AA9	A	260	269	Right-handed alpha
Helix 10	AB1	A	288	292	Right-handed 310
Helix 11	AB2	A	321	333	Right-handed alpha
Helix 12	AB3	A	335	348	Right-handed alpha
Helix 13	AB4	A	351	362	Right-handed alpha
Helix 14	AB5	B	37	50	Right-handed alpha
Helix 15	AB6	B	57	62	Right-handed alpha
Helix 16	AB7	B	107	119	Right-handed alpha
Helix 17	AB8	B	122	130	Right-handed alpha
Helix 18	AB9	B	144	156	Right-handed alpha
Helix 19	AC1	B	158	184	Right-handed alpha
Helix 20	AC2	B	837	856	Right-handed alpha
Helix 21	AC3	B	863	884	Right-handed alpha
Helix 22	AC4	B	885	887	Right-handed 310
Helix 23	AC5	B	916	935	Right-handed alpha
Helix 24	AC6	B	953	967	Right-handed alpha
Helix 25	AC7	B	982	986	Right-handed 310
Helix 26	AC8	C	14	17	Right-handed 310
Helix 27	AC9	C	18	40	Right-handed alpha
Helix 28	AD1	C	57	74	Right-handed alpha
Helix 29	AD2	C	95	101	Right-handed 310
Helix 30	AD3	C	129	131	Right-handed 310
Helix 31	AD4	C	132	146	Right-handed alpha
Helix 32	AD5	C	210	212	Right-handed 310
Helix 33	AD6	C	213	220	Right-handed alpha
Helix 34	AD7	C	257	259	Right-handed 310
Helix 35	AD8	C	260	269	Right-handed alpha
Helix 36	AD9	C	283	285	Right-handed 310
Helix 37	AE1	C	288	292	Right-handed 310
Helix 38	AE2	C	321	333	Right-handed alpha
Helix 39	AE3	C	335	348	Right-handed alpha
Helix 40	AE4	C	351	362	Right-handed alpha
Helix 41	AE5	D	37	50	Right-handed alpha
Helix 42	AE6	D	57	62	Right-handed alpha
Helix 43	AE7	D	107	120	Right-handed alpha
Helix 44	AE8	D	122	127	Right-handed alpha
Helix 45	AE9	D	144	156	Right-handed alpha
Helix 46	AF1	D	158	184	Right-handed alpha
Helix 47	AF2	D	838	859	Right-handed alpha
Helix 48	AF3	D	862	884	Right-handed alpha
Helix 49	AF4	D	885	887	Right-handed 310
Helix 50	AF5	D	916	935	Right-handed alpha
Helix 51	AF6	D	953	967	Right-handed alpha
Helix 52	AF7	D	979	983	Right-handed 310

There are 12 sheets in PDB entry 5F3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	77	80	parallel
Strand 3	A	43	46	parallel
Strand 4	A	2	6	parallel
Strand 5	A	223	228	anti-parallel
Strand 6	A	239	243	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	114	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	153	156	parallel
Strand 4	A	181	184	parallel
Strand 5	A	199	202	parallel
Strand 6	A	191	194	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	275	281	parallel
Strand 3	A	297	303	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	22	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	69	77	anti-parallel
Strand 4	B	80	88	anti-parallel
Strand 5	B	93	99	anti-parallel
Strand 6	B	102	105	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	943	946	parallel
Strand 3	B	972	976	parallel
Strand 4	B	26	32	parallel
Strand 5	B	988	995	parallel
Strand 6	B	998	1004	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	893	895	first strand
Strand 2	B	901	905	anti-parallel
Strand 3	B	908	911	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	77	80	parallel
Strand 3	C	43	46	parallel
Strand 4	C	2	6	parallel
Strand 5	C	223	228	anti-parallel
Strand 6	C	239	243	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	114	first strand
Strand 2	C	119	124	anti-parallel
Strand 3	C	153	156	parallel
Strand 4	C	181	184	parallel
Strand 5	C	199	202	parallel
Strand 6	C	191	194	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	254	first strand
Strand 2	C	275	281	parallel
Strand 3	C	298	303	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	22	first strand
Strand 2	D	3	13	anti-parallel
Strand 3	D	69	77	anti-parallel
Strand 4	D	80	88	anti-parallel
Strand 5	D	93	99	anti-parallel
Strand 6	D	102	105	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	943	946	parallel
Strand 3	D	973	977	parallel
Strand 4	D	27	32	parallel
Strand 5	D	988	994	parallel
Strand 6	D	999	1004	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	893	895	first strand
Strand 2	D	901	905	anti-parallel
Strand 3	D	908	911	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F3W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3W