Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F3X entry

There are 4 chains in PDB entry 5F3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 190
B
 VAL 349LEU 423
C
 ASP 2SER 192
D
 VAL 349LEU 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5F3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 17Right-handed alpha
Helix 2
AA2
A
19 37Right-handed alpha
Helix 3
AA3
A
38 47Right-handed alpha
Helix 4
AA4
A
56 63Right-handed alpha
Helix 5
AA5
A
64 66Right-handed 310
Helix 6
AA6
A
67 78Right-handed alpha
Helix 7
AA7
A
106 109Right-handed 310
Helix 8
AA8
A
121 127Right-handed alpha
Helix 9
AA9
A
146 155Right-handed alpha
Helix 10
AB1
A
185 189Right-handed alpha
Helix 11
AB2
B
352 361Right-handed alpha
Helix 12
AB3
B
362 365Right-handed 310
Helix 13
AB4
B
366 373Right-handed alpha
Helix 14
AB5
B
376 382Right-handed alpha
Helix 15
AB6
B
384 391Right-handed alpha
Helix 16
AB7
B
394 414Right-handed alpha
Helix 17
AB8
C
3 17Right-handed alpha
Helix 18
AB9
C
19 37Right-handed alpha
Helix 19
AC1
C
38 47Right-handed alpha
Helix 20
AC2
C
52 55Right-handed 310
Helix 21
AC3
C
56 63Right-handed alpha
Helix 22
AC4
C
64 66Right-handed 310
Helix 23
AC5
C
67 78Right-handed alpha
Helix 24
AC6
C
106 109Right-handed 310
Helix 25
AC7
C
121 127Right-handed alpha
Helix 26
AC8
C
146 155Right-handed alpha
Helix 27
AC9
C
185 192Right-handed alpha
Helix 28
AD1
D
352 361Right-handed alpha
Helix 29
AD2
D
362 365Right-handed 310
Helix 30
AD3
D
366 373Right-handed alpha
Helix 31
AD4
D
376 382Right-handed alpha
Helix 32
AD5
D
384 391Right-handed alpha
Helix 33
AD6
D
394 414Right-handed alpha
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There are 6 sheets in PDB entry 5F3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
140 141anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 91first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
110 117anti-parallel
Strand 5
A
100 105anti-parallel
Strand 6
B
421 423anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
181 184anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 91first strand
Strand 2
C
159 166anti-parallel
Strand 3
C
132 137anti-parallel
Strand 4
C
140 141anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
85 91first strand
Strand 2
C
159 166anti-parallel
Strand 3
C
132 137anti-parallel
Strand 4
C
110 117anti-parallel
Strand 5
C
100 105anti-parallel
Strand 6
D
421 423anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 172first strand
Strand 2
C
181 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il