Analysis of interatomic Contacts of Structural Units in PDB entry:
5F3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F3Y entry

There are 2 chains in PDB entry 5F3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 972ALA 1559
B
 SER 263PHE 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5F3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
972 981Right-handed alpha
Helix 2
AA2
A
1005 1021Right-handed alpha
Helix 3
AA3
A
1067 1082Right-handed alpha
Helix 4
AA4
A
1084 1098Right-handed alpha
Helix 5
AA5
A
1102 1120Right-handed alpha
Helix 6
AA6
A
1126 1136Right-handed alpha
Helix 7
AA7
A
1141 1156Right-handed alpha
Helix 8
AA8
A
1163 1173Right-handed alpha
Helix 9
AA9
A
1197 1210Right-handed alpha
Helix 10
AB1
A
1236 1252Right-handed alpha
Helix 11
AB2
A
1278 1296Right-handed alpha
Helix 12
AB3
A
1302 1318Right-handed alpha
Helix 13
AB4
A
1323 1335Right-handed alpha
Helix 14
AB5
A
1336 1341Right-handed alpha
Helix 15
AB6
A
1344 1360Right-handed alpha
Helix 16
AB7
A
1367 1383Right-handed alpha
Helix 17
AB8
A
1429 1431Right-handed 310
Helix 18
AB9
A
1463 1482Right-handed alpha
Helix 19
AC1
A
1551 1558Right-handed alpha
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There are 4 sheets in PDB entry 5F3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1187 1192first strand
Strand 2
A
1176 1182anti-parallel
Strand 3
A
1260 1266parallel
Strand 4
A
1217 1223anti-parallel
Strand 5
A
1226 1229anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1424 1428first strand
Strand 2
A
1415 1418anti-parallel
Strand 3
A
1406 1410anti-parallel
Strand 4
A
1389 1397anti-parallel
Strand 5
A
1456 1460anti-parallel
Strand 6
A
1447 1452anti-parallel
Strand 7
A
1433 1438anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1533 1537first strand
Strand 2
A
1522 1527anti-parallel
Strand 3
A
1507 1509anti-parallel
Strand 4
A
1484 1487anti-parallel
Strand 5
A
1541 1543anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il