Analysis of interatomic Contacts of Structural Units in PDB entry:
5F42


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F42 entry

There are 2 chains in PDB entry 5F42 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 276
B
 MET 1HIS 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5F42. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
195 202Right-handed alpha
Helix 2
AA2
A
205 221Right-handed alpha
Helix 3
AA3
A
225 240Right-handed alpha
Helix 4
AA4
A
243 252Right-handed alpha
Helix 5
AA5
A
262 266Right-handed 310
Helix 6
AA6
A
267 272Right-handed alpha
Helix 7
AA7
B
195 202Right-handed alpha
Helix 8
AA8
B
205 221Right-handed alpha
Helix 9
AA9
B
225 240Right-handed alpha
Helix 10
AB1
B
243 252Right-handed alpha
Helix 11
AB2
B
262 266Right-handed 310
Helix 12
AB3
B
267 272Right-handed alpha
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There are 6 sheets in PDB entry 5F42. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
25 26parallel
Strand 3
A
43 44parallel
Strand 4
A
61 64parallel
Strand 5
A
92 94parallel
Strand 6
A
117 118parallel
Strand 7
A
135 136parallel
Strand 8
A
153 154parallel
Strand 9
A
171 172parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
31 32parallel
Strand 3
A
49 50parallel
Strand 4
A
78 81parallel
Strand 5
A
103 106parallel
Strand 6
A
123 124parallel
Strand 7
A
141 142parallel
Strand 8
A
159 160parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
37 38parallel
Strand 3
A
55 56parallel
Strand 4
A
86 87parallel
Strand 5
A
111 112parallel
Strand 6
A
129 130parallel
Strand 7
A
147 148parallel
Strand 8
A
165 166parallel
Strand 9
A
180 183parallel
Strand 10
A
190 194anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
25 26parallel
Strand 3
B
43 44parallel
Strand 4
B
61 64parallel
Strand 5
B
92 94parallel
Strand 6
B
117 118parallel
Strand 7
B
135 136parallel
Strand 8
B
153 154parallel
Strand 9
B
171 172parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
31 32parallel
Strand 3
B
49 50parallel
Strand 4
B
78 81parallel
Strand 5
B
103 106parallel
Strand 6
B
123 124parallel
Strand 7
B
141 142parallel
Strand 8
B
159 160parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
37 38parallel
Strand 3
B
55 56parallel
Strand 4
B
86 87parallel
Strand 5
B
111 112parallel
Strand 6
B
129 130parallel
Strand 7
B
147 148parallel
Strand 8
B
165 166parallel
Strand 9
B
180 183parallel
Strand 10
B
190 194anti-parallel
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