Analysis of interatomic Contacts of Structural Units in PDB entry:
5F49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F49 entry

There are 4 chains in PDB entry 5F49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8LYS 157
B
 ASP 8LYS 157
C
 PHE 10LYS 157
D
 PHE 10LYS 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5F49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
44 54Right-handed alpha
Helix 3
AA3
A
96 99Right-handed 310
Helix 4
AA4
A
102 118Right-handed alpha
Helix 5
AA5
A
131 139Right-handed alpha
Helix 6
AA6
B
20 35Right-handed alpha
Helix 7
AA7
B
44 53Right-handed alpha
Helix 8
AA8
B
102 118Right-handed alpha
Helix 9
AA9
B
131 140Right-handed alpha
Helix 10
AB1
C
20 35Right-handed alpha
Helix 11
AB2
C
44 54Right-handed alpha
Helix 12
AB3
C
96 99Right-handed 310
Helix 13
AB4
C
102 118Right-handed alpha
Helix 14
AB5
C
131 139Right-handed alpha
Helix 15
AB6
D
20 35Right-handed alpha
Helix 16
AB7
D
44 53Right-handed alpha
Helix 17
AB8
D
96 99Right-handed 310
Helix 18
AB9
D
102 118Right-handed alpha
Helix 19
AC1
D
131 141Right-handed alpha
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There are 2 sheets in PDB entry 5F49. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 15first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
67 77anti-parallel
Strand 4
A
86 94anti-parallel
Strand 5
A
122 128parallel
Strand 6
B
145 155anti-parallel
Strand 7
A
145 155anti-parallel
Strand 8
B
122 128anti-parallel
Strand 9
B
86 94parallel
Strand 10
B
67 77anti-parallel
Strand 11
B
57 64anti-parallel
Strand 12
B
11 15anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
57 64anti-parallel
Strand 3
C
67 77anti-parallel
Strand 4
C
86 94anti-parallel
Strand 5
C
122 128parallel
Strand 6
D
145 155anti-parallel
Strand 7
C
145 155anti-parallel
Strand 8
D
122 128anti-parallel
Strand 9
D
86 94parallel
Strand 10
D
67 77anti-parallel
Strand 11
D
57 64anti-parallel
Strand 12
D
12 15anti-parallel
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