Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F4B entry

There are 2 chains in PDB entry 5F4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 199
B
 MET 1GLY 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5F4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
62 69Right-handed 310
Helix 3
AA3
A
84 92Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
121 134Right-handed alpha
Helix 6
AA6
A
143 158Right-handed alpha
Helix 7
AA7
A
176 199Right-handed alpha
Helix 8
AA8
B
13 28Right-handed alpha
Helix 9
AA9
B
62 69Right-handed 310
Helix 10
AB1
B
84 92Right-handed alpha
Helix 11
AB2
B
94 101Right-handed alpha
Helix 12
AB3
B
121 134Right-handed alpha
Helix 13
AB4
B
143 158Right-handed alpha
Helix 14
AB5
B
176 199Right-handed alpha
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There are 4 sheets in PDB entry 5F4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
3 9parallel
Strand 3
A
71 79parallel
Strand 4
A
82 83anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
3 9parallel
Strand 3
A
71 79parallel
Strand 4
A
107 113parallel
Strand 5
A
138 139parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
3 9parallel
Strand 3
B
71 79parallel
Strand 4
B
82 83anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
3 9parallel
Strand 3
B
71 79parallel
Strand 4
B
107 113parallel
Strand 5
B
138 139parallel
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