Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F4H entry

There are 4 chains in PDB entry 5F4H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 437
B	MET 1	VAL 435
C	MET 1	ASN 436
D	MET 1	LEU 6

There are 97 helices in PDB entry 5F4H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	14	21	Right-handed alpha
Helix 3	AA3	A	32	44	Right-handed alpha
Helix 4	AA4	A	48	66	Right-handed alpha
Helix 5	AA5	A	81	94	Right-handed alpha
Helix 6	AA6	A	101	112	Right-handed alpha
Helix 7	AA7	A	125	131	Right-handed 310
Helix 8	AA8	A	167	185	Right-handed alpha
Helix 9	AA9	A	237	247	Right-handed alpha
Helix 10	AB1	A	260	275	Right-handed alpha
Helix 11	AB2	A	300	302	Right-handed 310
Helix 12	AB3	A	305	314	Right-handed alpha
Helix 13	AB4	A	326	339	Right-handed alpha
Helix 14	AB5	A	351	363	Right-handed alpha
Helix 15	AB6	A	364	366	Right-handed 310
Helix 16	AB7	A	367	372	Right-handed alpha
Helix 17	AB8	B	7	12	Right-handed alpha
Helix 18	AB9	B	14	21	Right-handed alpha
Helix 19	AC1	B	32	44	Right-handed alpha
Helix 20	AC2	B	46	66	Right-handed alpha
Helix 21	AC3	B	81	94	Right-handed alpha
Helix 22	AC4	B	101	112	Right-handed alpha
Helix 23	AC5	B	125	131	Right-handed 310
Helix 24	AC6	B	167	185	Right-handed alpha
Helix 25	AC7	B	237	247	Right-handed alpha
Helix 26	AC8	B	260	275	Right-handed alpha
Helix 27	AC9	B	300	302	Right-handed 310
Helix 28	AD1	B	305	314	Right-handed alpha
Helix 29	AD2	B	326	339	Right-handed alpha
Helix 30	AD3	B	351	361	Right-handed alpha
Helix 31	AD4	B	364	366	Right-handed 310
Helix 32	AD5	B	367	372	Right-handed alpha
Helix 33	AD6	C	7	14	Right-handed alpha
Helix 34	AD7	C	14	21	Right-handed alpha
Helix 35	AD8	C	32	44	Right-handed alpha
Helix 36	AD9	C	46	66	Right-handed alpha
Helix 37	AE1	C	81	94	Right-handed alpha
Helix 38	AE2	C	101	112	Right-handed alpha
Helix 39	AE3	C	125	131	Right-handed 310
Helix 40	AE4	C	167	185	Right-handed alpha
Helix 41	AE5	C	237	247	Right-handed alpha
Helix 42	AE6	C	260	275	Right-handed alpha
Helix 43	AE7	C	300	302	Right-handed 310
Helix 44	AE8	C	305	315	Right-handed alpha
Helix 45	AE9	C	326	339	Right-handed alpha
Helix 46	AF1	C	351	363	Right-handed alpha
Helix 47	AF2	C	364	366	Right-handed 310
Helix 48	AF3	C	367	372	Right-handed alpha
Helix 49	AF4	D	7	12	Right-handed alpha
Helix 50	AF5	D	14	21	Right-handed alpha
Helix 51	AF6	D	32	44	Right-handed alpha
Helix 52	AF7	D	46	67	Right-handed alpha
Helix 53	AF8	D	81	94	Right-handed alpha
Helix 54	AF9	D	101	112	Right-handed alpha
Helix 55	AG1	D	125	131	Right-handed 310
Helix 56	AG2	D	167	185	Right-handed alpha
Helix 57	AG3	D	231	235	Right-handed 310
Helix 58	AG4	D	237	247	Right-handed alpha
Helix 59	AG5	D	260	275	Right-handed alpha
Helix 60	AG6	D	300	302	Right-handed 310
Helix 61	AG7	D	305	315	Right-handed alpha
Helix 62	AG8	D	326	339	Right-handed alpha
Helix 63	AG9	D	352	363	Right-handed alpha
Helix 64	AH1	D	364	366	Right-handed 310
Helix 65	AH2	D	367	372	Right-handed alpha
Helix 66	AH3	E	7	12	Right-handed alpha
Helix 67	AH4	E	14	21	Right-handed alpha
Helix 68	AH5	E	32	44	Right-handed alpha
Helix 69	AH6	E	46	66	Right-handed alpha
Helix 70	AH7	E	81	94	Right-handed alpha
Helix 71	AH8	E	101	112	Right-handed alpha
Helix 72	AH9	E	125	131	Right-handed 310
Helix 73	AI1	E	167	185	Right-handed alpha
Helix 74	AI2	E	237	247	Right-handed alpha
Helix 75	AI3	E	260	275	Right-handed alpha
Helix 76	AI4	E	300	302	Right-handed 310
Helix 77	AI5	E	305	315	Right-handed alpha
Helix 78	AI6	E	326	339	Right-handed alpha
Helix 79	AI7	E	351	363	Right-handed alpha
Helix 80	AI8	E	367	372	Right-handed alpha
Helix 81	AI9	F	7	13	Right-handed alpha
Helix 82	AJ1	F	14	21	Right-handed alpha
Helix 83	AJ2	F	32	44	Right-handed alpha
Helix 84	AJ3	F	46	66	Right-handed alpha
Helix 85	AJ4	F	81	94	Right-handed alpha
Helix 86	AJ5	F	101	112	Right-handed alpha
Helix 87	AJ6	F	127	132	Right-handed 310
Helix 88	AJ7	F	167	185	Right-handed alpha
Helix 89	AJ8	F	231	235	Right-handed 310
Helix 90	AJ9	F	237	247	Right-handed alpha
Helix 91	AK1	F	260	275	Right-handed alpha
Helix 92	AK2	F	300	302	Right-handed 310
Helix 93	AK3	F	305	315	Right-handed alpha
Helix 94	AK4	F	326	339	Right-handed alpha
Helix 95	AK5	F	352	363	Right-handed alpha
Helix 96	AK6	F	364	366	Right-handed 310
Helix 97	AK7	F	367	372	Right-handed alpha

There are 19 sheets in PDB entry 5F4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	73	first strand
Strand 2	A	27	31	parallel
Strand 3	A	3	6	parallel
Strand 4	A	96	99	parallel
Strand 5	A	115	117	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	160	first strand
Strand 2	A	147	152	anti-parallel
Strand 3	A	135	141	anti-parallel
Strand 4	A	219	223	anti-parallel
Strand 5	A	205	210	anti-parallel
Strand 6	A	197	202	anti-parallel
Strand 7	A	189	193	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	298	first strand
Strand 2	A	279	283	parallel
Strand 3	A	318	321	parallel
Strand 4	A	342	347	parallel
Strand 5	A	250	255	parallel
Strand 6	A	374	379	parallel
Strand 7	A	382	394	anti-parallel
Strand 8	A	406	413	anti-parallel
Strand 9	A	419	423	anti-parallel
Strand 10	A	431	432	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	27	31	parallel
Strand 3	B	3	6	parallel
Strand 4	B	96	99	parallel
Strand 5	B	115	117	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	135	141	anti-parallel
Strand 4	B	219	223	anti-parallel
Strand 5	B	205	210	anti-parallel
Strand 6	B	197	202	anti-parallel
Strand 7	B	189	193	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	279	283	parallel
Strand 3	B	318	321	parallel
Strand 4	B	342	348	parallel
Strand 5	B	250	255	parallel
Strand 6	B	374	379	parallel
Strand 7	B	382	393	anti-parallel
Strand 8	B	407	413	anti-parallel
Strand 9	B	419	425	anti-parallel
Strand 10	B	429	432	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	27	31	parallel
Strand 3	C	3	6	parallel
Strand 4	C	96	99	parallel
Strand 5	C	115	117	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	135	141	anti-parallel
Strand 4	C	219	223	anti-parallel
Strand 5	C	205	210	anti-parallel
Strand 6	C	197	202	anti-parallel
Strand 7	C	189	193	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	298	first strand
Strand 2	C	279	283	parallel
Strand 3	C	318	321	parallel
Strand 4	C	342	347	parallel
Strand 5	C	250	255	parallel
Strand 6	C	374	379	parallel
Strand 7	C	382	390	anti-parallel
Strand 8	C	409	413	anti-parallel
Strand 9	C	419	426	anti-parallel
Strand 10	C	429	434	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	406	407	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	73	first strand
Strand 2	D	27	31	parallel
Strand 3	D	3	6	parallel
Strand 4	D	96	99	parallel
Strand 5	D	115	117	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	160	first strand
Strand 2	D	147	150	anti-parallel
Strand 3	D	135	141	anti-parallel
Strand 4	D	219	223	anti-parallel
Strand 5	D	205	210	anti-parallel
Strand 6	D	197	202	anti-parallel
Strand 7	D	189	193	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	298	first strand
Strand 2	D	279	283	parallel
Strand 3	D	318	321	parallel
Strand 4	D	342	347	parallel
Strand 5	D	250	255	parallel
Strand 6	D	374	379	parallel
Strand 7	D	382	394	anti-parallel
Strand 8	D	406	413	anti-parallel
Strand 9	D	419	425	anti-parallel
Strand 10	D	429	432	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	73	first strand
Strand 2	E	27	31	parallel
Strand 3	E	3	6	parallel
Strand 4	E	96	99	parallel
Strand 5	E	115	117	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	160	first strand
Strand 2	E	147	151	anti-parallel
Strand 3	E	135	141	anti-parallel
Strand 4	E	219	223	anti-parallel
Strand 5	E	205	210	anti-parallel
Strand 6	E	197	202	anti-parallel
Strand 7	E	189	193	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	295	298	first strand
Strand 2	E	279	283	parallel
Strand 3	E	318	321	parallel
Strand 4	E	342	347	parallel
Strand 5	E	250	255	parallel
Strand 6	E	374	379	parallel
Strand 7	E	382	392	anti-parallel
Strand 8	E	408	413	anti-parallel
Strand 9	E	419	425	anti-parallel
Strand 10	E	429	432	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	73	first strand
Strand 2	F	27	31	parallel
Strand 3	F	3	6	parallel
Strand 4	F	96	99	parallel
Strand 5	F	115	117	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	160	first strand
Strand 2	F	147	150	anti-parallel
Strand 3	F	135	141	anti-parallel
Strand 4	F	219	223	anti-parallel
Strand 5	F	205	210	anti-parallel
Strand 6	F	197	202	anti-parallel
Strand 7	F	189	193	anti-parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	295	298	first strand
Strand 2	F	279	283	parallel
Strand 3	F	318	321	parallel
Strand 4	F	342	348	parallel
Strand 5	F	250	255	parallel
Strand 6	F	374	379	parallel
Strand 7	F	382	394	anti-parallel
Strand 8	F	406	413	anti-parallel
Strand 9	F	419	426	anti-parallel
Strand 10	F	429	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F4H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4H