Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F4H entry

There are 4 chains in PDB entry 5F4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ARG 437
B
MET 1VAL 435
C
MET 1ASN 436
D
MET 1LEU 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 5F4H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
14 21Right-handed alpha
Helix 3
AA3
A
32 44Right-handed alpha
Helix 4
AA4
A
48 66Right-handed alpha
Helix 5
AA5
A
81 94Right-handed alpha
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
125 131Right-handed 310
Helix 8
AA8
A
167 185Right-handed alpha
Helix 9
AA9
A
237 247Right-handed alpha
Helix 10
AB1
A
260 275Right-handed alpha
Helix 11
AB2
A
300 302Right-handed 310
Helix 12
AB3
A
305 314Right-handed alpha
Helix 13
AB4
A
326 339Right-handed alpha
Helix 14
AB5
A
351 363Right-handed alpha
Helix 15
AB6
A
364 366Right-handed 310
Helix 16
AB7
A
367 372Right-handed alpha
Helix 17
AB8
B
7 12Right-handed alpha
Helix 18
AB9
B
14 21Right-handed alpha
Helix 19
AC1
B
32 44Right-handed alpha
Helix 20
AC2
B
46 66Right-handed alpha
Helix 21
AC3
B
81 94Right-handed alpha
Helix 22
AC4
B
101 112Right-handed alpha
Helix 23
AC5
B
125 131Right-handed 310
Helix 24
AC6
B
167 185Right-handed alpha
Helix 25
AC7
B
237 247Right-handed alpha
Helix 26
AC8
B
260 275Right-handed alpha
Helix 27
AC9
B
300 302Right-handed 310
Helix 28
AD1
B
305 314Right-handed alpha
Helix 29
AD2
B
326 339Right-handed alpha
Helix 30
AD3
B
351 361Right-handed alpha
Helix 31
AD4
B
364 366Right-handed 310
Helix 32
AD5
B
367 372Right-handed alpha
Helix 33
AD6
C
7 14Right-handed alpha
Helix 34
AD7
C
14 21Right-handed alpha
Helix 35
AD8
C
32 44Right-handed alpha
Helix 36
AD9
C
46 66Right-handed alpha
Helix 37
AE1
C
81 94Right-handed alpha
Helix 38
AE2
C
101 112Right-handed alpha
Helix 39
AE3
C
125 131Right-handed 310
Helix 40
AE4
C
167 185Right-handed alpha
Helix 41
AE5
C
237 247Right-handed alpha
Helix 42
AE6
C
260 275Right-handed alpha
Helix 43
AE7
C
300 302Right-handed 310
Helix 44
AE8
C
305 315Right-handed alpha
Helix 45
AE9
C
326 339Right-handed alpha
Helix 46
AF1
C
351 363Right-handed alpha
Helix 47
AF2
C
364 366Right-handed 310
Helix 48
AF3
C
367 372Right-handed alpha
Helix 49
AF4
D
7 12Right-handed alpha
Helix 50
AF5
D
14 21Right-handed alpha
Helix 51
AF6
D
32 44Right-handed alpha
Helix 52
AF7
D
46 67Right-handed alpha
Helix 53
AF8
D
81 94Right-handed alpha
Helix 54
AF9
D
101 112Right-handed alpha
Helix 55
AG1
D
125 131Right-handed 310
Helix 56
AG2
D
167 185Right-handed alpha
Helix 57
AG3
D
231 235Right-handed 310
Helix 58
AG4
D
237 247Right-handed alpha
Helix 59
AG5
D
260 275Right-handed alpha
Helix 60
AG6
D
300 302Right-handed 310
Helix 61
AG7
D
305 315Right-handed alpha
Helix 62
AG8
D
326 339Right-handed alpha
Helix 63
AG9
D
352 363Right-handed alpha
Helix 64
AH1
D
364 366Right-handed 310
Helix 65
AH2
D
367 372Right-handed alpha
Helix 66
AH3
E
7 12Right-handed alpha
Helix 67
AH4
E
14 21Right-handed alpha
Helix 68
AH5
E
32 44Right-handed alpha
Helix 69
AH6
E
46 66Right-handed alpha
Helix 70
AH7
E
81 94Right-handed alpha
Helix 71
AH8
E
101 112Right-handed alpha
Helix 72
AH9
E
125 131Right-handed 310
Helix 73
AI1
E
167 185Right-handed alpha
Helix 74
AI2
E
237 247Right-handed alpha
Helix 75
AI3
E
260 275Right-handed alpha
Helix 76
AI4
E
300 302Right-handed 310
Helix 77
AI5
E
305 315Right-handed alpha
Helix 78
AI6
E
326 339Right-handed alpha
Helix 79
AI7
E
351 363Right-handed alpha
Helix 80
AI8
E
367 372Right-handed alpha
Helix 81
AI9
F
7 13Right-handed alpha
Helix 82
AJ1
F
14 21Right-handed alpha
Helix 83
AJ2
F
32 44Right-handed alpha
Helix 84
AJ3
F
46 66Right-handed alpha
Helix 85
AJ4
F
81 94Right-handed alpha
Helix 86
AJ5
F
101 112Right-handed alpha
Helix 87
AJ6
F
127 132Right-handed 310
Helix 88
AJ7
F
167 185Right-handed alpha
Helix 89
AJ8
F
231 235Right-handed 310
Helix 90
AJ9
F
237 247Right-handed alpha
Helix 91
AK1
F
260 275Right-handed alpha
Helix 92
AK2
F
300 302Right-handed 310
Helix 93
AK3
F
305 315Right-handed alpha
Helix 94
AK4
F
326 339Right-handed alpha
Helix 95
AK5
F
352 363Right-handed alpha
Helix 96
AK6
F
364 366Right-handed 310
Helix 97
AK7
F
367 372Right-handed alpha
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There are 19 sheets in PDB entry 5F4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 73first strand
Strand 2
A
27 31parallel
Strand 3
A
3 6parallel
Strand 4
A
96 99parallel
Strand 5
A
115 117parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
155 160first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
135 141anti-parallel
Strand 4
A
219 223anti-parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
197 202anti-parallel
Strand 7
A
189 193anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 298first strand
Strand 2
A
279 283parallel
Strand 3
A
318 321parallel
Strand 4
A
342 347parallel
Strand 5
A
250 255parallel
Strand 6
A
374 379parallel
Strand 7
A
382 394anti-parallel
Strand 8
A
406 413anti-parallel
Strand 9
A
419 423anti-parallel
Strand 10
A
431 432anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
70 73first strand
Strand 2
B
27 31parallel
Strand 3
B
3 6parallel
Strand 4
B
96 99parallel
Strand 5
B
115 117parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
156 160first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
135 141anti-parallel
Strand 4
B
219 223anti-parallel
Strand 5
B
205 210anti-parallel
Strand 6
B
197 202anti-parallel
Strand 7
B
189 193anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
295 298first strand
Strand 2
B
279 283parallel
Strand 3
B
318 321parallel
Strand 4
B
342 348parallel
Strand 5
B
250 255parallel
Strand 6
B
374 379parallel
Strand 7
B
382 393anti-parallel
Strand 8
B
407 413anti-parallel
Strand 9
B
419 425anti-parallel
Strand 10
B
429 432anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
70 73first strand
Strand 2
C
27 31parallel
Strand 3
C
3 6parallel
Strand 4
C
96 99parallel
Strand 5
C
115 117parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
156 160first strand
Strand 2
C
147 151anti-parallel
Strand 3
C
135 141anti-parallel
Strand 4
C
219 223anti-parallel
Strand 5
C
205 210anti-parallel
Strand 6
C
197 202anti-parallel
Strand 7
C
189 193anti-parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
295 298first strand
Strand 2
C
279 283parallel
Strand 3
C
318 321parallel
Strand 4
C
342 347parallel
Strand 5
C
250 255parallel
Strand 6
C
374 379parallel
Strand 7
C
382 390anti-parallel
Strand 8
C
409 413anti-parallel
Strand 9
C
419 426anti-parallel
Strand 10
C
429 434anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
393 394first strand
Strand 2
C
406 407anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
70 73first strand
Strand 2
D
27 31parallel
Strand 3
D
3 6parallel
Strand 4
D
96 99parallel
Strand 5
D
115 117parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
157 160first strand
Strand 2
D
147 150anti-parallel
Strand 3
D
135 141anti-parallel
Strand 4
D
219 223anti-parallel
Strand 5
D
205 210anti-parallel
Strand 6
D
197 202anti-parallel
Strand 7
D
189 193anti-parallel
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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
295 298first strand
Strand 2
D
279 283parallel
Strand 3
D
318 321parallel
Strand 4
D
342 347parallel
Strand 5
D
250 255parallel
Strand 6
D
374 379parallel
Strand 7
D
382 394anti-parallel
Strand 8
D
406 413anti-parallel
Strand 9
D
419 425anti-parallel
Strand 10
D
429 432anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
70 73first strand
Strand 2
E
27 31parallel
Strand 3
E
3 6parallel
Strand 4
E
96 99parallel
Strand 5
E
115 117parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
156 160first strand
Strand 2
E
147 151anti-parallel
Strand 3
E
135 141anti-parallel
Strand 4
E
219 223anti-parallel
Strand 5
E
205 210anti-parallel
Strand 6
E
197 202anti-parallel
Strand 7
E
189 193anti-parallel
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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
295 298first strand
Strand 2
E
279 283parallel
Strand 3
E
318 321parallel
Strand 4
E
342 347parallel
Strand 5
E
250 255parallel
Strand 6
E
374 379parallel
Strand 7
E
382 392anti-parallel
Strand 8
E
408 413anti-parallel
Strand 9
E
419 425anti-parallel
Strand 10
E
429 432anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
70 73first strand
Strand 2
F
27 31parallel
Strand 3
F
3 6parallel
Strand 4
F
96 99parallel
Strand 5
F
115 117parallel
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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
157 160first strand
Strand 2
F
147 150anti-parallel
Strand 3
F
135 141anti-parallel
Strand 4
F
219 223anti-parallel
Strand 5
F
205 210anti-parallel
Strand 6
F
197 202anti-parallel
Strand 7
F
189 193anti-parallel
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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
295 298first strand
Strand 2
F
279 283parallel
Strand 3
F
318 321parallel
Strand 4
F
342 348parallel
Strand 5
F
250 255parallel
Strand 6
F
374 379parallel
Strand 7
F
382 394anti-parallel
Strand 8
F
406 413anti-parallel
Strand 9
F
419 426anti-parallel
Strand 10
F
429 434anti-parallel
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