Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F4M entry

There are 2 chains in PDB entry 5F4M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 221MET 528
B
 SER 224MET 528
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5F4M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
233 237Right-handed 310
Helix 2
AA2
A
279 283Right-handed 310
Helix 3
AA3
A
363 366Right-handed 310
Helix 4
AA4
A
452 463Right-handed alpha
Helix 5
AA5
B
233 237Right-handed 310
Helix 6
AA6
B
279 283Right-handed 310
Helix 7
AA7
B
363 366Right-handed 310
Helix 8
AA8
B
452 463Right-handed alpha
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There are 6 sheets in PDB entry 5F4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
248 251anti-parallel
Strand 4
A
503 504anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
427 435anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
483 490anti-parallel
Strand 5
A
470 476anti-parallel
Strand 6
A
512 519anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 356first strand
Strand 2
A
330 338anti-parallel
Strand 3
A
382 391anti-parallel
Strand 4
A
286 293anti-parallel
Strand 5
A
300 305anti-parallel
Strand 6
A
368 371anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 449first strand
Strand 2
B
427 435anti-parallel
Strand 3
B
248 251anti-parallel
Strand 4
B
503 504anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
446 449first strand
Strand 2
B
427 435anti-parallel
Strand 3
B
494 498anti-parallel
Strand 4
B
483 490anti-parallel
Strand 5
B
470 476anti-parallel
Strand 6
B
512 519anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 356first strand
Strand 2
B
330 338anti-parallel
Strand 3
B
382 391anti-parallel
Strand 4
B
286 293anti-parallel
Strand 5
B
300 305anti-parallel
Strand 6
B
368 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il