Analysis of interatomic Contacts of Structural Units in PDB entry:
5F4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F4Z entry

There are 4 chains in PDB entry 5F4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1HIS 388
B
 MSE 1HIS 390
C
 MSE 1SER 387
D
 MSE 1VAL 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 5F4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
55 64Right-handed alpha
Helix 4
AA4
A
102 107Right-handed 310
Helix 5
AA5
A
109 115Right-handed alpha
Helix 6
AA6
A
116 119Right-handed 310
Helix 7
AA7
A
122 125Right-handed 310
Helix 8
AA8
A
149 165Right-handed alpha
Helix 9
AA9
A
174 188Right-handed alpha
Helix 10
AB1
A
207 212Right-handed 310
Helix 11
AB2
A
215 232Right-handed alpha
Helix 12
AB3
A
233 240Right-handed alpha
Helix 13
AB4
A
242 253Right-handed alpha
Helix 14
AB5
A
253 269Right-handed alpha
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
280 295Right-handed alpha
Helix 17
AB8
A
296 307Right-handed alpha
Helix 18
AB9
A
308 311Right-handed 310
Helix 19
AC1
A
341 349Right-handed alpha
Helix 20
AC2
A
364 369Right-handed alpha
Helix 21
AC3
A
369 388Right-handed alpha
Helix 22
AC4
B
9 22Right-handed alpha
Helix 23
AC5
B
39 52Right-handed alpha
Helix 24
AC6
B
55 64Right-handed alpha
Helix 25
AC7
B
102 107Right-handed 310
Helix 26
AC8
B
109 115Right-handed alpha
Helix 27
AC9
B
116 119Right-handed 310
Helix 28
AD1
B
122 125Right-handed 310
Helix 29
AD2
B
149 165Right-handed alpha
Helix 30
AD3
B
174 188Right-handed alpha
Helix 31
AD4
B
215 232Right-handed alpha
Helix 32
AD5
B
233 240Right-handed alpha
Helix 33
AD6
B
242 253Right-handed alpha
Helix 34
AD7
B
253 269Right-handed alpha
Helix 35
AD8
B
274 278Right-handed 310
Helix 36
AD9
B
280 295Right-handed alpha
Helix 37
AE1
B
296 307Right-handed alpha
Helix 38
AE2
B
308 311Right-handed 310
Helix 39
AE3
B
341 349Right-handed alpha
Helix 40
AE4
B
364 369Right-handed alpha
Helix 41
AE5
B
369 390Right-handed alpha
Helix 42
AE6
C
9 22Right-handed alpha
Helix 43
AE7
C
39 53Right-handed alpha
Helix 44
AE8
C
55 64Right-handed alpha
Helix 45
AE9
C
102 107Right-handed 310
Helix 46
AF1
C
109 115Right-handed alpha
Helix 47
AF2
C
116 119Right-handed 310
Helix 48
AF3
C
122 125Right-handed 310
Helix 49
AF4
C
149 164Right-handed alpha
Helix 50
AF5
C
174 188Right-handed alpha
Helix 51
AF6
C
207 212Right-handed 310
Helix 52
AF7
C
215 232Right-handed alpha
Helix 53
AF8
C
233 240Right-handed alpha
Helix 54
AF9
C
242 253Right-handed alpha
Helix 55
AG1
C
253 269Right-handed alpha
Helix 56
AG2
C
274 278Right-handed 310
Helix 57
AG3
C
280 295Right-handed alpha
Helix 58
AG4
C
296 307Right-handed alpha
Helix 59
AG5
C
308 311Right-handed 310
Helix 60
AG6
C
341 349Right-handed alpha
Helix 61
AG7
C
364 369Right-handed alpha
Helix 62
AG8
C
369 387Right-handed alpha
Helix 63
AG9
D
9 22Right-handed alpha
Helix 64
AH1
D
39 52Right-handed alpha
Helix 65
AH2
D
55 64Right-handed alpha
Helix 66
AH3
D
102 107Right-handed 310
Helix 67
AH4
D
109 115Right-handed alpha
Helix 68
AH5
D
116 120Right-handed 310
Helix 69
AH6
D
122 125Right-handed 310
Helix 70
AH7
D
149 165Right-handed alpha
Helix 71
AH8
D
174 188Right-handed alpha
Helix 72
AH9
D
207 212Right-handed 310
Helix 73
AI1
D
215 232Right-handed alpha
Helix 74
AI2
D
233 242Right-handed alpha
Helix 75
AI3
D
242 253Right-handed alpha
Helix 76
AI4
D
253 269Right-handed alpha
Helix 77
AI5
D
274 278Right-handed 310
Helix 78
AI6
D
280 295Right-handed alpha
Helix 79
AI7
D
296 307Right-handed alpha
Helix 80
AI8
D
308 311Right-handed 310
Helix 81
AI9
D
341 349Right-handed alpha
Helix 82
AJ1
D
364 369Right-handed alpha
Helix 83
AJ2
D
369 390Right-handed alpha
Helix 84
AJ3
E
9 22Right-handed alpha
Helix 85
AJ4
E
39 53Right-handed alpha
Helix 86
AJ5
E
55 64Right-handed alpha
Helix 87
AJ6
E
102 107Right-handed 310
Helix 88
AJ7
E
109 115Right-handed alpha
Helix 89
AJ8
E
116 119Right-handed 310
Helix 90
AJ9
E
122 125Right-handed 310
Helix 91
AK1
E
149 165Right-handed alpha
Helix 92
AK2
E
175 188Right-handed alpha
Helix 93
AK3
E
207 212Right-handed 310
Helix 94
AK4
E
215 232Right-handed alpha
Helix 95
AK5
E
233 240Right-handed alpha
Helix 96
AK6
E
242 253Right-handed alpha
Helix 97
AK7
E
253 269Right-handed alpha
Helix 98
AK8
E
274 278Right-handed 310
Helix 99
AK9
E
280 295Right-handed alpha
Helix 100
AL1
E
296 307Right-handed alpha
Helix 101
AL2
E
308 311Right-handed 310
Helix 102
AL3
E
341 349Right-handed alpha
Helix 103
AL4
E
364 369Right-handed alpha
Helix 104
AL5
E
369 386Right-handed alpha
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There are 5 sheets in PDB entry 5F4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
127 132anti-parallel
Strand 5
A
91 96parallel
Strand 6
A
169 173parallel
Strand 7
A
192 197parallel
Strand 8
A
328 332parallel
Strand 9
A
352 357parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
127 132anti-parallel
Strand 5
B
91 96parallel
Strand 6
B
169 173parallel
Strand 7
B
192 197parallel
Strand 8
B
328 332parallel
Strand 9
B
352 357parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
68 73anti-parallel
Strand 3
C
76 83anti-parallel
Strand 4
C
127 132anti-parallel
Strand 5
C
91 96parallel
Strand 6
C
169 173parallel
Strand 7
C
192 197parallel
Strand 8
C
328 332parallel
Strand 9
C
352 357parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
68 73anti-parallel
Strand 3
D
76 83anti-parallel
Strand 4
D
127 132anti-parallel
Strand 5
D
91 96parallel
Strand 6
D
169 173parallel
Strand 7
D
192 197parallel
Strand 8
D
328 332parallel
Strand 9
D
352 357parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 4first strand
Strand 2
E
68 73anti-parallel
Strand 3
E
76 83anti-parallel
Strand 4
E
127 132anti-parallel
Strand 5
E
91 96parallel
Strand 6
E
169 173parallel
Strand 7
E
192 197parallel
Strand 8
E
328 332parallel
Strand 9
E
352 357parallel
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