Analysis of interatomic Contacts of Structural Units in PDB entry:
5F55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F55 entry

There are 2 chains in PDB entry 5F55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 705
C
 G 194 C 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5F55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 26Right-handed alpha
Helix 2
AA2
A
28 38Right-handed alpha
Helix 3
AA3
A
41 47Right-handed alpha
Helix 4
AA4
A
54 70Right-handed alpha
Helix 5
AA5
A
81 98Right-handed alpha
Helix 6
AA6
A
120 128Right-handed alpha
Helix 7
AA7
A
140 150Right-handed alpha
Helix 8
AA8
A
188 204Right-handed alpha
Helix 9
AA9
A
209 211Right-handed 310
Helix 10
AB1
A
212 223Right-handed alpha
Helix 11
AB2
A
228 245Right-handed alpha
Helix 12
AB3
A
247 257Right-handed alpha
Helix 13
AB4
A
263 270Right-handed alpha
Helix 14
AB5
A
270 281Right-handed alpha
Helix 15
AB6
A
284 293Right-handed alpha
Helix 16
AB7
A
295 328Right-handed alpha
Helix 17
AB8
A
343 345Right-handed 310
Helix 18
AB9
A
346 359Right-handed alpha
Helix 19
AC1
A
379 386Right-handed alpha
Helix 20
AC2
A
409 423Right-handed alpha
Helix 21
AC3
A
438 442Right-handed 310
Helix 22
AC4
A
443 450Right-handed alpha
Helix 23
AC5
A
451 454Right-handed 310
Helix 24
AC6
A
516 520Right-handed 310
Helix 25
AC7
A
552 562Right-handed alpha
Helix 26
AC8
A
569 580Right-handed alpha
Helix 27
AC9
A
604 619Right-handed alpha
Helix 28
AD1
A
627 638Right-handed alpha
Helix 29
AD2
A
639 644Right-handed alpha
Helix 30
AD3
A
649 672Right-handed alpha
Helix 31
AD4
A
673 685Right-handed alpha
Helix 32
AD5
A
693 702Right-handed alpha
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There are 5 sheets in PDB entry 5F55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 433first strand
Strand 2
A
6 9parallel
Strand 3
A
537 538parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
73 77parallel
Strand 3
A
130 133parallel
Strand 4
A
153 157parallel
Strand 5
A
170 172parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
362 366parallel
Strand 3
A
369 373anti-parallel
Strand 4
A
400 405anti-parallel
Strand 5
A
391 396anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
465 477parallel
Strand 3
A
504 515anti-parallel
Strand 4
A
522 532anti-parallel
Strand 5
A
491 495parallel
Strand 6
A
483 488anti-parallel
Strand 7
A
465 477anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
565 567first strand
Strand 2
A
596 599parallel
Strand 3
A
621 624parallel
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