Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5F entry

There are 8 chains in PDB entry 5F5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 175THR 326
B
 U 1 A 20
C
 ASN 175THR 326
D
 U 1 A 20
E
 ASN 175THR 326
F
 U 1 A 20
G
 GLN 178GLN 325
H
 U 1 A 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5F5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
177 190Right-handed alpha
Helix 2
AA2
A
196 212Right-handed alpha
Helix 3
AA3
A
219 231Right-handed alpha
Helix 4
AA4
A
238 252Right-handed alpha
Helix 5
AA5
A
271 274Right-handed 310
Helix 6
AA6
A
275 294Right-handed alpha
Helix 7
AA7
A
299 309Right-handed alpha
Helix 8
AA8
A
313 326Right-handed alpha
Helix 9
AA9
C
176 190Right-handed alpha
Helix 10
AB1
C
196 212Right-handed alpha
Helix 11
AB2
C
219 231Right-handed alpha
Helix 12
AB3
C
238 252Right-handed alpha
Helix 13
AB4
C
271 274Right-handed 310
Helix 14
AB5
C
275 294Right-handed alpha
Helix 15
AB6
C
299 309Right-handed alpha
Helix 16
AB7
C
313 324Right-handed alpha
Helix 17
AB8
E
176 190Right-handed alpha
Helix 18
AB9
E
196 212Right-handed alpha
Helix 19
AC1
E
219 231Right-handed alpha
Helix 20
AC2
E
238 252Right-handed alpha
Helix 21
AC3
E
271 274Right-handed 310
Helix 22
AC4
E
275 294Right-handed alpha
Helix 23
AC5
E
299 309Right-handed alpha
Helix 24
AC6
E
313 324Right-handed alpha
Helix 25
AC7
G
179 190Right-handed alpha
Helix 26
AC8
G
196 212Right-handed alpha
Helix 27
AC9
G
219 231Right-handed alpha
Helix 28
AD1
G
238 252Right-handed alpha
Helix 29
AD2
G
271 274Right-handed 310
Helix 30
AD3
G
275 294Right-handed alpha
Helix 31
AD4
G
299 309Right-handed alpha
Helix 32
AD5
G
313 324Right-handed alpha
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There are 4 sheets in PDB entry 5F5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 218first strand
Strand 2
A
263 269anti-parallel
Strand 3
A
255 260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 218first strand
Strand 2
C
263 269anti-parallel
Strand 3
C
255 260anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
217 218first strand
Strand 2
E
263 269anti-parallel
Strand 3
E
255 260anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
217 218first strand
Strand 2
G
263 269anti-parallel
Strand 3
G
255 260anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il