Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5L entry

There is 1 chain in PDB entry 5F5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4PRO 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5F5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
61 69Right-handed alpha
Helix 4
AA4
A
85 104Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
123 140Right-handed alpha
Helix 7
AA7
A
153 158Right-handed alpha
Helix 8
AA8
A
183 197Right-handed alpha
Helix 9
AA9
A
197 202Right-handed alpha
Helix 10
AB1
A
214 227Right-handed alpha
Helix 11
AB2
A
236 242Right-handed alpha
Helix 12
AB3
A
248 262Right-handed alpha
Helix 13
AB4
A
267 275Right-handed alpha
Helix 14
AB5
A
280 288Right-handed alpha
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There are 3 sheets in PDB entry 5F5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
32 36parallel
Strand 3
A
8 10parallel
Strand 4
A
74 77parallel
Strand 5
A
108 112parallel
Strand 6
A
143 148parallel
Strand 7
A
205 208parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
179 182parallel
Strand 3
A
211 213anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 163first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
230 234parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il