Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5M entry

There are 2 chains in PDB entry 5F5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21GLU 367
B
 LYS 21HIS 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5F5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
48 50Right-handed 310
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
68 74Right-handed alpha
Helix 5
AA5
A
75 84Right-handed alpha
Helix 6
AA6
A
98 103Right-handed 310
Helix 7
AA7
A
109 117Right-handed alpha
Helix 8
AA8
A
126 138Right-handed alpha
Helix 9
AA9
A
139 143Right-handed 310
Helix 10
AB1
A
146 164Right-handed alpha
Helix 11
AB2
A
170 174Right-handed 310
Helix 12
AB3
A
175 189Right-handed alpha
Helix 13
AB4
A
189 202Right-handed alpha
Helix 14
AB5
A
208 221Right-handed alpha
Helix 15
AB6
A
226 236Right-handed alpha
Helix 16
AB7
A
252 271Right-handed alpha
Helix 17
AB8
A
272 277Right-handed 310
Helix 18
AB9
A
278 283Right-handed alpha
Helix 19
AC1
A
291 294Right-handed 310
Helix 20
AC2
A
295 310Right-handed alpha
Helix 21
AC3
A
322 365Right-handed alpha
Helix 22
AC4
B
30 44Right-handed alpha
Helix 23
AC5
B
48 50Right-handed 310
Helix 24
AC6
B
51 66Right-handed alpha
Helix 25
AC7
B
68 74Right-handed alpha
Helix 26
AC8
B
75 84Right-handed alpha
Helix 27
AC9
B
98 103Right-handed 310
Helix 28
AD1
B
110 116Right-handed alpha
Helix 29
AD2
B
126 138Right-handed alpha
Helix 30
AD3
B
139 143Right-handed 310
Helix 31
AD4
B
146 165Right-handed alpha
Helix 32
AD5
B
170 174Right-handed 310
Helix 33
AD6
B
175 189Right-handed alpha
Helix 34
AD7
B
189 202Right-handed alpha
Helix 35
AD8
B
208 221Right-handed alpha
Helix 36
AD9
B
226 236Right-handed alpha
Helix 37
AE1
B
247 253Right-handed alpha
Helix 38
AE2
B
256 271Right-handed alpha
Helix 39
AE3
B
272 277Right-handed 310
Helix 40
AE4
B
278 283Right-handed alpha
Helix 41
AE5
B
295 309Right-handed alpha
Helix 42
AE6
B
322 365Right-handed alpha
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There are 3 sheets in PDB entry 5F5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
87 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
243 246anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
87 92parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il