Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5N entry

There are 2 chains in PDB entry 5F5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5PRO 293
B
 ASN 5PRO 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5F5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
61 69Right-handed alpha
Helix 4
AA4
A
85 105Right-handed alpha
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
A
123 140Right-handed alpha
Helix 7
AA7
A
153 157Right-handed 310
Helix 8
AA8
A
183 197Right-handed alpha
Helix 9
AA9
A
197 202Right-handed alpha
Helix 10
AB1
A
215 227Right-handed alpha
Helix 11
AB2
A
236 243Right-handed alpha
Helix 12
AB3
A
248 262Right-handed alpha
Helix 13
AB4
A
267 275Right-handed alpha
Helix 14
AB5
A
280 289Right-handed alpha
Helix 15
AB6
B
15 29Right-handed alpha
Helix 16
AB7
B
41 50Right-handed alpha
Helix 17
AB8
B
61 69Right-handed alpha
Helix 18
AB9
B
85 105Right-handed alpha
Helix 19
AC1
B
116 120Right-handed 310
Helix 20
AC2
B
123 140Right-handed alpha
Helix 21
AC3
B
153 157Right-handed 310
Helix 22
AC4
B
183 197Right-handed alpha
Helix 23
AC5
B
197 202Right-handed alpha
Helix 24
AC6
B
215 227Right-handed alpha
Helix 25
AC7
B
236 243Right-handed alpha
Helix 26
AC8
B
248 262Right-handed alpha
Helix 27
AC9
B
267 275Right-handed alpha
Helix 28
AD1
B
280 289Right-handed alpha
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There are 6 sheets in PDB entry 5F5N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
32 36parallel
Strand 3
A
8 10parallel
Strand 4
A
74 77parallel
Strand 5
A
108 112parallel
Strand 6
A
143 148parallel
Strand 7
A
205 208parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
178 182parallel
Strand 3
A
211 214anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
230 234parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
32 36parallel
Strand 3
B
8 10parallel
Strand 4
B
74 77parallel
Strand 5
B
108 112parallel
Strand 6
B
143 148parallel
Strand 7
B
205 208parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
178 182parallel
Strand 3
B
211 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
166 171anti-parallel
Strand 3
B
230 234parallel
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