Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5P entry

There are 8 chains in PDB entry 5F5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1429SER 1609
B
 ASP 1428ASP 1608
C
 GLY 837GLN 891
D
 ASN 835ALA 895
E
 MET 839ALA 895
F
 GLN 838ALA 895
G
 THR 1426LEU 1610
H
 LEU 1429ASP 1608
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5F5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1429 1480Right-handed alpha
Helix 2
AA2
A
1481 1519Right-handed alpha
Helix 3
AA3
A
1524 1567Right-handed alpha
Helix 4
AA4
A
1568 1609Right-handed alpha
Helix 5
AA5
B
1429 1480Right-handed alpha
Helix 6
AA6
B
1481 1515Right-handed alpha
Helix 7
AA7
B
1529 1567Right-handed alpha
Helix 8
AA8
B
1568 1608Right-handed alpha
Helix 9
AA9
C
838 890Right-handed alpha
Helix 10
AB1
D
836 895Right-handed alpha
Helix 11
AB2
E
840 895Right-handed alpha
Helix 12
AB3
F
839 894Right-handed alpha
Helix 13
AB4
G
1431 1480Right-handed alpha
Helix 14
AB5
G
1481 1519Right-handed alpha
Helix 15
AB6
G
1526 1567Right-handed alpha
Helix 16
AB7
G
1568 1609Right-handed alpha
Helix 17
AB8
H
1430 1480Right-handed alpha
Helix 18
AB9
H
1481 1515Right-handed alpha
Helix 19
AC1
H
1527 1567Right-handed alpha
Helix 20
AC2
H
1568 1607Right-handed alpha
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There are no sheets in PDB entry 5F5P
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il