Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5R entry

There are 2 chains in PDB entry 5F5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 70THR 294
B
 PRO 70THR 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5F5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 104Right-handed alpha
Helix 2
AA2
A
110 129Right-handed alpha
Helix 3
AA3
A
164 172Right-handed alpha
Helix 4
AA4
A
177 189Right-handed alpha
Helix 5
AA5
A
193 202Right-handed alpha
Helix 6
AA6
A
203 210Right-handed 310
Helix 7
AA7
A
259 265Right-handed 310
Helix 8
AA8
A
266 275Right-handed alpha
Helix 9
AA9
A
276 281Right-handed 310
Helix 10
AB1
B
91 104Right-handed alpha
Helix 11
AB2
B
110 129Right-handed alpha
Helix 12
AB3
B
164 172Right-handed alpha
Helix 13
AB4
B
177 190Right-handed alpha
Helix 14
AB5
B
193 202Right-handed alpha
Helix 15
AB6
B
203 210Right-handed 310
Helix 16
AB7
B
259 265Right-handed 310
Helix 17
AB8
B
266 275Right-handed alpha
Helix 18
AB9
B
276 281Right-handed 310
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There are 2 sheets in PDB entry 5F5R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 89first strand
Strand 2
A
238 245anti-parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
212 220anti-parallel
Strand 5
A
250 257anti-parallel
Strand 6
A
153 158anti-parallel
Strand 7
A
143 148anti-parallel
Strand 8
A
285 287parallel
Strand 9
A
290 291anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 89first strand
Strand 2
B
238 245anti-parallel
Strand 3
B
228 233anti-parallel
Strand 4
B
212 220anti-parallel
Strand 5
B
250 257anti-parallel
Strand 6
B
153 158anti-parallel
Strand 7
B
143 148anti-parallel
Strand 8
B
285 287parallel
Strand 9
B
290 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il