Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5T entry

There are 4 chains in PDB entry 5F5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ASP 218
B
 PRO 4GLU 217
C
 MET 215LYS 278
D
 GLY 216ARG 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5F5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
30 34Right-handed 310
Helix 3
AA3
A
36 46Right-handed alpha
Helix 4
AA4
A
46 53Right-handed alpha
Helix 5
AA5
A
57 69Right-handed alpha
Helix 6
AA6
A
83 96Right-handed alpha
Helix 7
AA7
A
98 113Right-handed alpha
Helix 8
AA8
A
113 128Right-handed alpha
Helix 9
AA9
A
129 138Right-handed alpha
Helix 10
AB1
A
139 143Right-handed 310
Helix 11
AB2
A
160 170Right-handed alpha
Helix 12
AB3
A
183 190Right-handed alpha
Helix 13
AB4
A
202 216Right-handed alpha
Helix 14
AB5
B
6 16Right-handed alpha
Helix 15
AB6
B
17 21Right-handed 310
Helix 16
AB7
B
30 34Right-handed 310
Helix 17
AB8
B
36 46Right-handed alpha
Helix 18
AB9
B
46 53Right-handed alpha
Helix 19
AC1
B
57 69Right-handed alpha
Helix 20
AC2
B
83 96Right-handed alpha
Helix 21
AC3
B
98 107Right-handed alpha
Helix 22
AC4
B
107 113Right-handed alpha
Helix 23
AC5
B
113 128Right-handed alpha
Helix 24
AC6
B
129 138Right-handed alpha
Helix 25
AC7
B
139 143Right-handed 310
Helix 26
AC8
B
160 170Right-handed alpha
Helix 27
AC9
B
183 190Right-handed alpha
Helix 28
AD1
B
202 217Right-handed alpha
Helix 29
AD2
C
222 260Right-handed alpha
Helix 30
AD3
C
262 278Right-handed alpha
Helix 31
AD4
D
222 258Right-handed alpha
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There are 6 sheets in PDB entry 5F5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
155 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
81 82anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
155 159anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
176 177anti-parallel
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