Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F5U entry

There are 9 chains in PDB entry 5F5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 22	GLU 209
B	GLY 213	ARG 257
C	GLY 131	SER 162
D	LEU 15	ASN 216
E	VAL 221	ARG 258
F	GLU 132	VAL 160
G	GLY 22	LYS 215
H	THR 217	ARG 258
I	VAL 133	VAL 160

There are 41 helices in PDB entry 5F5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	46	Right-handed alpha
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	57	69	Right-handed alpha
Helix 4	AA4	A	83	96	Right-handed alpha
Helix 5	AA5	A	98	113	Right-handed alpha
Helix 6	AA6	A	113	128	Right-handed alpha
Helix 7	AA7	A	129	138	Right-handed alpha
Helix 8	AA8	A	139	143	Right-handed 310
Helix 9	AA9	A	160	170	Right-handed alpha
Helix 10	AB1	A	183	190	Right-handed alpha
Helix 11	AB2	A	198	209	Right-handed alpha
Helix 12	AB3	B	222	257	Right-handed alpha
Helix 13	AB4	C	137	162	Right-handed alpha
Helix 14	AB5	D	30	35	Right-handed alpha
Helix 15	AB6	D	36	46	Right-handed alpha
Helix 16	AB7	D	46	53	Right-handed alpha
Helix 17	AB8	D	57	69	Right-handed alpha
Helix 18	AB9	D	83	96	Right-handed alpha
Helix 19	AC1	D	98	113	Right-handed alpha
Helix 20	AC2	D	113	128	Right-handed alpha
Helix 21	AC3	D	129	138	Right-handed alpha
Helix 22	AC4	D	139	143	Right-handed 310
Helix 23	AC5	D	160	170	Right-handed alpha
Helix 24	AC6	D	183	190	Right-handed alpha
Helix 25	AC7	D	201	216	Right-handed alpha
Helix 26	AC8	E	222	258	Right-handed alpha
Helix 27	AC9	F	137	160	Right-handed alpha
Helix 28	AD1	G	30	35	Right-handed alpha
Helix 29	AD2	G	36	46	Right-handed alpha
Helix 30	AD3	G	46	53	Right-handed alpha
Helix 31	AD4	G	57	69	Right-handed alpha
Helix 32	AD5	G	83	96	Right-handed alpha
Helix 33	AD6	G	98	113	Right-handed alpha
Helix 34	AD7	G	113	128	Right-handed alpha
Helix 35	AD8	G	129	138	Right-handed alpha
Helix 36	AD9	G	139	143	Right-handed 310
Helix 37	AE1	G	160	170	Right-handed alpha
Helix 38	AE2	G	183	190	Right-handed alpha
Helix 39	AE3	G	202	215	Right-handed alpha
Helix 40	AE4	H	222	258	Right-handed alpha
Helix 41	AE5	I	137	159	Right-handed alpha

There are 8 sheets in PDB entry 5F5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	81	82	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	151	first strand
Strand 2	A	154	159	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	176	177	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	81	82	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	154	159	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	75	76	first strand
Strand 2	G	81	82	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	147	first strand
Strand 2	G	158	159	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	173	first strand
Strand 2	G	176	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5U