Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F5V entry

There are 6 chains in PDB entry 5F5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19GLY 219
B
 THR 217LYS 278
C
 THR 137LYS 157
D
 GLY 19GLY 219
E
 THR 217ALA 275
F
 THR 137LYS 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5F5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
57 69Right-handed alpha
Helix 5
AA5
A
83 96Right-handed alpha
Helix 6
AA6
A
98 113Right-handed alpha
Helix 7
AA7
A
113 128Right-handed alpha
Helix 8
AA8
A
129 138Right-handed alpha
Helix 9
AA9
A
139 142Right-handed 310
Helix 10
AB1
A
160 170Right-handed alpha
Helix 11
AB2
A
183 190Right-handed alpha
Helix 12
AB3
A
202 219Right-handed alpha
Helix 13
AB4
B
222 262Right-handed alpha
Helix 14
AB5
B
262 277Right-handed alpha
Helix 15
AB6
C
138 157Right-handed alpha
Helix 16
AB7
D
30 35Right-handed alpha
Helix 17
AB8
D
36 46Right-handed alpha
Helix 18
AB9
D
46 53Right-handed alpha
Helix 19
AC1
D
57 69Right-handed alpha
Helix 20
AC2
D
83 96Right-handed alpha
Helix 21
AC3
D
98 113Right-handed alpha
Helix 22
AC4
D
113 128Right-handed alpha
Helix 23
AC5
D
129 138Right-handed alpha
Helix 24
AC6
D
139 142Right-handed 310
Helix 25
AC7
D
160 170Right-handed alpha
Helix 26
AC8
D
183 190Right-handed alpha
Helix 27
AC9
D
202 219Right-handed alpha
Helix 28
AD1
E
222 261Right-handed alpha
Helix 29
AD2
E
262 275Right-handed alpha
Helix 30
AD3
F
138 157Right-handed alpha
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There are 6 sheets in PDB entry 5F5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
81 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
155 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
176 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 76first strand
Strand 2
D
81 82anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 150first strand
Strand 2
D
155 159anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
172 173first strand
Strand 2
D
176 177anti-parallel
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