Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F5W entry

There are 5 chains in PDB entry 5F5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 283
B	MET 1	ASN 281
C	MET 1	ASN 281
D	PHE 3	GLU 280
E	PHE 3	GLU 280

There are 63 helices in PDB entry 5F5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	17	Right-handed alpha
Helix 2	AA2	A	31	34	Right-handed 310
Helix 3	AA3	A	35	40	Right-handed alpha
Helix 4	AA4	A	59	62	Right-handed 310
Helix 5	AA5	A	87	99	Right-handed alpha
Helix 6	AA6	A	102	106	Right-handed 310
Helix 7	AA7	A	118	121	Right-handed 310
Helix 8	AA8	A	161	169	Right-handed alpha
Helix 9	AA9	A	173	176	Right-handed 310
Helix 10	AB1	A	185	202	Right-handed alpha
Helix 11	AB2	A	205	227	Right-handed alpha
Helix 12	AB3	A	228	249	Right-handed alpha
Helix 13	AB4	A	253	281	Right-handed alpha
Helix 14	AB5	B	2	17	Right-handed alpha
Helix 15	AB6	B	31	34	Right-handed 310
Helix 16	AB7	B	35	40	Right-handed alpha
Helix 17	AB8	B	59	62	Right-handed 310
Helix 18	AB9	B	87	99	Right-handed alpha
Helix 19	AC1	B	102	106	Right-handed 310
Helix 20	AC2	B	118	121	Right-handed 310
Helix 21	AC3	B	161	169	Right-handed alpha
Helix 22	AC4	B	185	202	Right-handed alpha
Helix 23	AC5	B	205	227	Right-handed alpha
Helix 24	AC6	B	228	249	Right-handed alpha
Helix 25	AC7	B	253	280	Right-handed alpha
Helix 26	AC8	C	2	17	Right-handed alpha
Helix 27	AC9	C	31	34	Right-handed 310
Helix 28	AD1	C	35	43	Right-handed alpha
Helix 29	AD2	C	59	62	Right-handed 310
Helix 30	AD3	C	87	99	Right-handed alpha
Helix 31	AD4	C	102	106	Right-handed 310
Helix 32	AD5	C	118	121	Right-handed 310
Helix 33	AD6	C	161	169	Right-handed alpha
Helix 34	AD7	C	173	176	Right-handed 310
Helix 35	AD8	C	185	202	Right-handed alpha
Helix 36	AD9	C	205	227	Right-handed alpha
Helix 37	AE1	C	228	249	Right-handed alpha
Helix 38	AE2	C	253	281	Right-handed alpha
Helix 39	AE3	D	4	17	Right-handed alpha
Helix 40	AE4	D	31	34	Right-handed 310
Helix 41	AE5	D	35	40	Right-handed alpha
Helix 42	AE6	D	59	62	Right-handed 310
Helix 43	AE7	D	87	99	Right-handed alpha
Helix 44	AE8	D	102	106	Right-handed 310
Helix 45	AE9	D	118	121	Right-handed 310
Helix 46	AF1	D	161	170	Right-handed alpha
Helix 47	AF2	D	185	202	Right-handed alpha
Helix 48	AF3	D	205	227	Right-handed alpha
Helix 49	AF4	D	228	249	Right-handed alpha
Helix 50	AF5	D	253	280	Right-handed alpha
Helix 51	AF6	E	4	17	Right-handed alpha
Helix 52	AF7	E	31	34	Right-handed 310
Helix 53	AF8	E	35	40	Right-handed alpha
Helix 54	AF9	E	59	62	Right-handed 310
Helix 55	AG1	E	87	99	Right-handed alpha
Helix 56	AG2	E	102	106	Right-handed 310
Helix 57	AG3	E	118	121	Right-handed 310
Helix 58	AG4	E	161	169	Right-handed alpha
Helix 59	AG5	E	173	176	Right-handed 310
Helix 60	AG6	E	185	202	Right-handed alpha
Helix 61	AG7	E	205	227	Right-handed alpha
Helix 62	AG8	E	228	249	Right-handed alpha
Helix 63	AG9	E	253	280	Right-handed alpha

There are 15 sheets in PDB entry 5F5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	48	57	parallel
Strand 3	A	73	82	anti-parallel
Strand 4	A	155	160	anti-parallel
Strand 5	A	134	145	anti-parallel
Strand 6	A	122	131	anti-parallel
Strand 7	A	108	117	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	48	57	parallel
Strand 3	A	73	82	anti-parallel
Strand 4	A	155	160	anti-parallel
Strand 5	A	134	145	anti-parallel
Strand 6	A	148	149	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	183	184	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	48	57	parallel
Strand 3	B	73	82	anti-parallel
Strand 4	B	155	160	anti-parallel
Strand 5	B	134	145	anti-parallel
Strand 6	B	122	131	anti-parallel
Strand 7	B	108	117	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	48	57	parallel
Strand 3	B	73	82	anti-parallel
Strand 4	B	155	160	anti-parallel
Strand 5	B	134	145	anti-parallel
Strand 6	B	148	149	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	183	184	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	48	57	parallel
Strand 3	C	73	82	anti-parallel
Strand 4	C	155	160	anti-parallel
Strand 5	C	134	145	anti-parallel
Strand 6	C	122	131	anti-parallel
Strand 7	C	108	117	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	48	57	parallel
Strand 3	C	73	82	anti-parallel
Strand 4	C	155	160	anti-parallel
Strand 5	C	134	145	anti-parallel
Strand 6	C	148	149	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	183	184	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	48	57	parallel
Strand 3	D	73	82	anti-parallel
Strand 4	D	155	160	anti-parallel
Strand 5	D	134	145	anti-parallel
Strand 6	D	122	131	anti-parallel
Strand 7	D	108	117	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	48	57	parallel
Strand 3	D	73	82	anti-parallel
Strand 4	D	155	160	anti-parallel
Strand 5	D	134	145	anti-parallel
Strand 6	D	148	149	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	183	184	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	48	57	parallel
Strand 3	E	73	82	anti-parallel
Strand 4	E	155	160	anti-parallel
Strand 5	E	134	145	anti-parallel
Strand 6	E	122	131	anti-parallel
Strand 7	E	108	117	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	48	57	parallel
Strand 3	E	73	82	anti-parallel
Strand 4	E	155	160	anti-parallel
Strand 5	E	134	145	anti-parallel
Strand 6	E	148	149	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	180	first strand
Strand 2	E	183	184	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F5W