Analysis of interatomic Contacts of Structural Units in PDB entry:
5F67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F67 entry

There are 4 chains in PDB entry 5F67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 351LYS 448
C
 GLY 1257LEU 1275
B
 SER 351LEU 447
D
 GLY 1257LEU 1275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 5F67. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
356 361Right-handed alpha
Helix 2
AA2
A
400 405Right-handed alpha
Helix 3
AA3
A
425 436Right-handed alpha
Helix 4
AA4
B
356 361Right-handed alpha
Helix 5
AA5
B
400 405Right-handed alpha
Helix 6
AA6
B
425 436Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5F67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
439 445anti-parallel
Strand 3
A
412 416anti-parallel
Strand 4
A
419 420anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 384first strand
Strand 2
A
388 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1262 1263first strand
Strand 2
C
1270 1271anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 370first strand
Strand 2
B
439 445anti-parallel
Strand 3
B
412 416anti-parallel
Strand 4
B
419 420anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 384first strand
Strand 2
B
388 396anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1262 1263first strand
Strand 2
D
1270 1271anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il