Analysis of interatomic Contacts of Structural Units in PDB entry:
5F6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F6C entry

There are 4 chains in PDB entry 5F6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG -1	MET 510
B	HIS 0	ALA 509
C	G 1	U 2
E	G 2	G 4

There are 35 helices in PDB entry 5F6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	73	Right-handed 310
Helix 2	AA2	A	74	78	Right-handed 310
Helix 3	AA3	A	89	93	Right-handed 310
Helix 4	AA4	A	145	156	Right-handed alpha
Helix 5	AA5	A	170	173	Right-handed 310
Helix 6	AA6	A	179	200	Right-handed alpha
Helix 7	AA7	A	212	222	Right-handed alpha
Helix 8	AA8	A	233	247	Right-handed alpha
Helix 9	AA9	A	251	256	Right-handed 310
Helix 10	AB1	A	264	269	Right-handed alpha
Helix 11	AB2	A	271	278	Right-handed alpha
Helix 12	AB3	A	314	337	Right-handed alpha
Helix 13	AB4	A	352	367	Right-handed alpha
Helix 14	AB5	A	395	400	Right-handed alpha
Helix 15	AB6	A	415	432	Right-handed alpha
Helix 16	AB7	A	445	452	Right-handed alpha
Helix 17	AB8	A	455	466	Right-handed alpha
Helix 18	AB9	A	501	508	Right-handed alpha
Helix 19	AC1	B	69	73	Right-handed 310
Helix 20	AC2	B	74	78	Right-handed 310
Helix 21	AC3	B	145	157	Right-handed alpha
Helix 22	AC4	B	170	173	Right-handed 310
Helix 23	AC5	B	176	200	Right-handed alpha
Helix 24	AC6	B	212	221	Right-handed alpha
Helix 25	AC7	B	233	247	Right-handed alpha
Helix 26	AC8	B	251	254	Right-handed 310
Helix 27	AC9	B	264	269	Right-handed alpha
Helix 28	AD1	B	271	278	Right-handed alpha
Helix 29	AD2	B	314	338	Right-handed alpha
Helix 30	AD3	B	352	367	Right-handed alpha
Helix 31	AD4	B	395	400	Right-handed alpha
Helix 32	AD5	B	415	431	Right-handed alpha
Helix 33	AD6	B	445	452	Right-handed alpha
Helix 34	AD7	B	455	466	Right-handed alpha
Helix 35	AD8	B	501	509	Right-handed alpha

There are 14 sheets in PDB entry 5F6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	29	30	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	226	231	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	41	50	anti-parallel
Strand 3	A	99	106	anti-parallel
Strand 4	A	115	117	anti-parallel
Strand 5	A	67	69	parallel
Strand 6	A	55	59	anti-parallel
Strand 7	A	41	50	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	165	168	anti-parallel
Strand 3	A	138	139	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	341	346	parallel
Strand 5	A	384	389	anti-parallel
Strand 6	A	374	376	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	B	412	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	B	401	403	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	476	first strand
Strand 2	A	438	444	parallel
Strand 3	A	487	489	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	30	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	2	6	anti-parallel
Strand 4	B	226	231	parallel
Strand 5	B	256	258	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	55	59	anti-parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	99	104	anti-parallel
Strand 5	B	116	117	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	55	59	anti-parallel
Strand 3	B	41	50	anti-parallel
Strand 4	B	205	208	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	127	130	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	137	139	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	299	305	anti-parallel
Strand 4	B	341	346	parallel
Strand 5	B	384	389	anti-parallel
Strand 6	B	374	376	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	476	first strand
Strand 2	B	436	444	parallel
Strand 3	B	485	490	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F6C