Analysis of interatomic Contacts of Structural Units in PDB entry:
5F72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F72 entry

There are 4 chains in PDB entry 5F72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	GLY 325	THR 609
C	GLY 325	THR 609
T	GLN 3	ARG 249
S	GLN 3	ILE 247

There are 5 helices in PDB entry 5F72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	T	28	32	Right-handed 310
Helix 2	AA2	T	87	91	Right-handed 310
Helix 3	AA3	T	220	224	Right-handed 310
Helix 4	AA4	S	87	91	Right-handed 310
Helix 5	AA5	S	220	224	Right-handed 310

There are 28 sheets in PDB entry 5F72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	352	355	first strand
Strand 2	K	342	345	anti-parallel
Strand 3	K	328	331	anti-parallel
Strand 4	K	605	608	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	366	370	first strand
Strand 2	K	373	377	anti-parallel
Strand 3	K	393	397	anti-parallel
Strand 4	K	402	405	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	380	383	first strand
Strand 2	K	386	389	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	417	421	first strand
Strand 2	K	424	428	anti-parallel
Strand 3	K	440	444	anti-parallel
Strand 4	K	449	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	431	432	first strand
Strand 2	K	435	436	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	464	468	first strand
Strand 2	K	471	475	anti-parallel
Strand 3	K	487	491	anti-parallel
Strand 4	K	496	500	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	511	515	first strand
Strand 2	K	518	522	anti-parallel
Strand 3	K	534	538	anti-parallel
Strand 4	K	543	547	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	558	562	first strand
Strand 2	K	565	569	anti-parallel
Strand 3	K	581	585	anti-parallel
Strand 4	K	590	594	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	342	345	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	605	609	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	370	first strand
Strand 2	C	373	377	anti-parallel
Strand 3	C	393	397	anti-parallel
Strand 4	C	402	405	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	383	first strand
Strand 2	C	386	389	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	421	first strand
Strand 2	C	424	428	anti-parallel
Strand 3	C	440	444	anti-parallel
Strand 4	C	449	453	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	432	first strand
Strand 2	C	435	436	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	468	first strand
Strand 2	C	471	478	anti-parallel
Strand 3	C	483	491	anti-parallel
Strand 4	C	496	499	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	515	first strand
Strand 2	C	518	522	anti-parallel
Strand 3	C	534	538	anti-parallel
Strand 4	C	543	546	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	565	569	anti-parallel
Strand 3	C	581	585	anti-parallel
Strand 4	C	590	594	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	7	first strand
Strand 2	T	18	24	anti-parallel
Strand 3	T	78	83	anti-parallel
Strand 4	T	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	12	first strand
Strand 2	T	115	119	parallel
Strand 3	T	92	102	anti-parallel
Strand 4	T	33	39	anti-parallel
Strand 5	T	45	51	anti-parallel
Strand 6	T	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	10	12	first strand
Strand 2	T	115	119	parallel
Strand 3	T	92	102	anti-parallel
Strand 4	T	105	111	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	145	148	first strand
Strand 2	T	160	166	anti-parallel
Strand 3	T	211	216	anti-parallel
Strand 4	T	203	208	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	151	154	first strand
Strand 2	T	243	247	parallel
Strand 3	T	225	231	anti-parallel
Strand 4	T	174	179	anti-parallel
Strand 5	T	186	190	anti-parallel
Strand 6	T	194	195	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	151	154	first strand
Strand 2	T	243	247	parallel
Strand 3	T	225	231	anti-parallel
Strand 4	T	238	239	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	7	first strand
Strand 2	S	18	24	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	102	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	102	anti-parallel
Strand 4	S	105	111	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	145	148	first strand
Strand 2	S	160	166	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	208	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	151	153	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	151	153	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F72

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F72