Analysis of interatomic Contacts of Structural Units in PDB entry:
5F77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5F77 entry

There are 3 chains in PDB entry 5F77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 291
B
 LYS 3GLN 294
C
 LYS 3LEU 292
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5F77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 66Right-handed 310
Helix 2
AA2
A
67 78Right-handed alpha
Helix 3
AA3
A
139 153Right-handed alpha
Helix 4
AA4
A
164 168Right-handed 310
Helix 5
AA5
A
189 199Right-handed alpha
Helix 6
AA6
A
210 218Right-handed alpha
Helix 7
AA7
A
236 240Right-handed 310
Helix 8
AA8
A
242 270Right-handed alpha
Helix 9
AA9
A
273 287Right-handed alpha
Helix 10
AB1
B
62 66Right-handed 310
Helix 11
AB2
B
67 78Right-handed alpha
Helix 12
AB3
B
139 153Right-handed alpha
Helix 13
AB4
B
164 168Right-handed 310
Helix 14
AB5
B
189 199Right-handed alpha
Helix 15
AB6
B
210 218Right-handed alpha
Helix 16
AB7
B
244 270Right-handed alpha
Helix 17
AB8
B
273 287Right-handed alpha
Helix 18
AB9
B
290 294Right-handed 310
Helix 19
AC1
C
62 66Right-handed 310
Helix 20
AC2
C
67 78Right-handed alpha
Helix 21
AC3
C
139 153Right-handed alpha
Helix 22
AC4
C
164 168Right-handed 310
Helix 23
AC5
C
189 199Right-handed alpha
Helix 24
AC6
C
210 218Right-handed alpha
Helix 25
AC7
C
243 271Right-handed alpha
Helix 26
AC8
C
273 287Right-handed alpha
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There are 8 sheets in PDB entry 5F77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
5 10parallel
Strand 5
A
82 91parallel
Strand 6
A
203 205anti-parallel
Strand 7
A
178 182parallel
Strand 8
A
106 110parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
47 53anti-parallel
Strand 4
A
5 10parallel
Strand 5
A
82 91parallel
Strand 6
A
221 230parallel
Strand 7
A
101 103anti-parallel
Strand 8
A
172 174parallel
Strand 9
A
156 158parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
126 127parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
47 53anti-parallel
Strand 4
B
5 10parallel
Strand 5
B
82 91parallel
Strand 6
B
203 205anti-parallel
Strand 7
B
178 182parallel
Strand 8
B
106 110parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
47 53anti-parallel
Strand 4
B
5 10parallel
Strand 5
B
82 91parallel
Strand 6
B
221 231parallel
Strand 7
B
101 103anti-parallel
Strand 8
B
172 174parallel
Strand 9
B
156 158parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
126 127parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
39 44anti-parallel
Strand 3
C
47 53anti-parallel
Strand 4
C
5 10parallel
Strand 5
C
82 91parallel
Strand 6
C
203 205anti-parallel
Strand 7
C
178 182parallel
Strand 8
C
106 110parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
39 44anti-parallel
Strand 3
C
47 53anti-parallel
Strand 4
C
5 10parallel
Strand 5
C
82 91parallel
Strand 6
C
221 231parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
172 174parallel
Strand 9
C
156 158parallel
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