Analysis of interatomic Contacts of Structural Units in PDB entry:
5F78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F78 entry

There are 5 chains in PDB entry 5F78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	LEU 291
B	LYS 3	LEU 291
C	LYS 3	LEU 291
D	LYS 3	LEU 291
E	LYS 3	CYS 172

There are 54 helices in PDB entry 5F78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	66	Right-handed 310
Helix 2	AA2	A	67	78	Right-handed alpha
Helix 3	AA3	A	139	153	Right-handed alpha
Helix 4	AA4	A	164	168	Right-handed 310
Helix 5	AA5	A	189	199	Right-handed alpha
Helix 6	AA6	A	210	218	Right-handed alpha
Helix 7	AA7	A	232	236	Right-handed 310
Helix 8	AA8	A	238	270	Right-handed alpha
Helix 9	AA9	A	273	287	Right-handed alpha
Helix 10	AB1	B	62	66	Right-handed 310
Helix 11	AB2	B	67	78	Right-handed alpha
Helix 12	AB3	B	139	153	Right-handed alpha
Helix 13	AB4	B	164	168	Right-handed 310
Helix 14	AB5	B	189	199	Right-handed alpha
Helix 15	AB6	B	210	218	Right-handed alpha
Helix 16	AB7	B	232	236	Right-handed 310
Helix 17	AB8	B	238	270	Right-handed alpha
Helix 18	AB9	B	273	287	Right-handed alpha
Helix 19	AC1	C	62	66	Right-handed 310
Helix 20	AC2	C	67	78	Right-handed alpha
Helix 21	AC3	C	139	153	Right-handed alpha
Helix 22	AC4	C	164	168	Right-handed 310
Helix 23	AC5	C	189	199	Right-handed alpha
Helix 24	AC6	C	210	218	Right-handed alpha
Helix 25	AC7	C	232	236	Right-handed 310
Helix 26	AC8	C	240	270	Right-handed alpha
Helix 27	AC9	C	273	287	Right-handed alpha
Helix 28	AD1	D	16	20	Right-handed 310
Helix 29	AD2	D	62	66	Right-handed 310
Helix 30	AD3	D	67	78	Right-handed alpha
Helix 31	AD4	D	139	153	Right-handed alpha
Helix 32	AD5	D	164	168	Right-handed 310
Helix 33	AD6	D	189	199	Right-handed alpha
Helix 34	AD7	D	210	218	Right-handed alpha
Helix 35	AD8	D	232	236	Right-handed 310
Helix 36	AD9	D	238	270	Right-handed alpha
Helix 37	AE1	D	273	287	Right-handed alpha
Helix 38	AE2	E	62	66	Right-handed 310
Helix 39	AE3	E	67	78	Right-handed alpha
Helix 40	AE4	E	139	153	Right-handed alpha
Helix 41	AE5	E	164	168	Right-handed 310
Helix 42	AE6	E	189	199	Right-handed alpha
Helix 43	AE7	E	210	218	Right-handed alpha
Helix 44	AE8	E	232	236	Right-handed 310
Helix 45	AE9	E	240	270	Right-handed alpha
Helix 46	AF1	E	273	287	Right-handed alpha
Helix 47	AF2	F	62	66	Right-handed 310
Helix 48	AF3	F	67	78	Right-handed alpha
Helix 49	AF4	F	139	153	Right-handed alpha
Helix 50	AF5	F	164	168	Right-handed 310
Helix 51	AF6	F	189	199	Right-handed alpha
Helix 52	AF7	F	210	218	Right-handed alpha
Helix 53	AF8	F	242	270	Right-handed alpha
Helix 54	AF9	F	273	287	Right-handed alpha

There are 18 sheets in PDB entry 5F78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	48	53	anti-parallel
Strand 4	A	5	10	parallel
Strand 5	A	82	91	parallel
Strand 6	A	203	205	anti-parallel
Strand 7	A	178	182	parallel
Strand 8	A	106	110	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	48	53	anti-parallel
Strand 4	A	5	10	parallel
Strand 5	A	82	91	parallel
Strand 6	A	221	228	parallel
Strand 7	A	101	103	anti-parallel
Strand 8	A	172	174	parallel
Strand 9	A	156	158	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	126	127	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	47	53	anti-parallel
Strand 4	B	5	10	parallel
Strand 5	B	82	91	parallel
Strand 6	B	203	205	anti-parallel
Strand 7	B	178	182	parallel
Strand 8	B	106	110	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	47	53	anti-parallel
Strand 4	B	5	10	parallel
Strand 5	B	82	91	parallel
Strand 6	B	221	229	parallel
Strand 7	B	101	103	anti-parallel
Strand 8	B	172	174	parallel
Strand 9	B	156	158	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	126	127	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	47	53	anti-parallel
Strand 4	C	5	10	parallel
Strand 5	C	82	91	parallel
Strand 6	C	203	205	anti-parallel
Strand 7	C	178	182	parallel
Strand 8	C	106	110	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	47	53	anti-parallel
Strand 4	C	5	10	parallel
Strand 5	C	82	91	parallel
Strand 6	C	221	229	parallel
Strand 7	C	101	103	anti-parallel
Strand 8	C	172	174	parallel
Strand 9	C	156	158	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	126	127	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	39	43	anti-parallel
Strand 3	D	48	53	anti-parallel
Strand 4	D	5	10	parallel
Strand 5	D	82	91	parallel
Strand 6	D	203	205	anti-parallel
Strand 7	D	178	182	parallel
Strand 8	D	106	110	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	26	first strand
Strand 2	D	39	43	anti-parallel
Strand 3	D	48	53	anti-parallel
Strand 4	D	5	10	parallel
Strand 5	D	82	91	parallel
Strand 6	D	221	229	parallel
Strand 7	D	101	103	anti-parallel
Strand 8	D	172	174	parallel
Strand 9	D	156	158	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	126	127	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	26	first strand
Strand 2	E	39	44	anti-parallel
Strand 3	E	47	53	anti-parallel
Strand 4	E	5	10	parallel
Strand 5	E	82	91	parallel
Strand 6	E	203	205	anti-parallel
Strand 7	E	178	182	parallel
Strand 8	E	106	110	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	24	26	first strand
Strand 2	E	39	44	anti-parallel
Strand 3	E	47	53	anti-parallel
Strand 4	E	5	10	parallel
Strand 5	E	82	91	parallel
Strand 6	E	221	229	parallel
Strand 7	E	101	103	anti-parallel
Strand 8	E	172	174	parallel
Strand 9	E	156	158	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	E	126	127	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	39	44	anti-parallel
Strand 3	F	47	53	anti-parallel
Strand 4	F	5	10	parallel
Strand 5	F	82	91	parallel
Strand 6	F	203	205	anti-parallel
Strand 7	F	178	182	parallel
Strand 8	F	106	110	parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	39	44	anti-parallel
Strand 3	F	47	53	anti-parallel
Strand 4	F	5	10	parallel
Strand 5	F	82	91	parallel
Strand 6	F	221	228	parallel
Strand 7	F	101	103	anti-parallel
Strand 8	F	172	174	parallel
Strand 9	F	156	158	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	126	127	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F78

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F78