Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F7C entry

There are 4 chains in PDB entry 5F7C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 12	VAL 723
B	LEU 25	PRO 720
C	ASP 22	PRO 720
D	SER 24	PRO 720

There are 53 helices in PDB entry 5F7C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	290	303	Right-handed alpha
Helix 2	AA2	A	310	314	Right-handed 310
Helix 3	AA3	A	324	338	Right-handed alpha
Helix 4	AA4	A	437	453	Right-handed alpha
Helix 5	AA5	A	475	500	Right-handed alpha
Helix 6	AA6	A	512	516	Right-handed 310
Helix 7	AA7	A	527	543	Right-handed alpha
Helix 8	AA8	A	568	581	Right-handed alpha
Helix 9	AA9	A	594	598	Right-handed 310
Helix 10	AB1	A	601	614	Right-handed alpha
Helix 11	AB2	A	615	627	Right-handed alpha
Helix 12	AB3	A	636	640	Right-handed 310
Helix 13	AB4	A	644	650	Right-handed 310
Helix 14	AB5	B	290	303	Right-handed alpha
Helix 15	AB6	B	310	313	Right-handed 310
Helix 16	AB7	B	324	338	Right-handed alpha
Helix 17	AB8	B	435	451	Right-handed alpha
Helix 18	AB9	B	475	500	Right-handed alpha
Helix 19	AC1	B	512	516	Right-handed 310
Helix 20	AC2	B	527	543	Right-handed alpha
Helix 21	AC3	B	568	581	Right-handed alpha
Helix 22	AC4	B	594	598	Right-handed 310
Helix 23	AC5	B	603	614	Right-handed alpha
Helix 24	AC6	B	615	627	Right-handed alpha
Helix 25	AC7	B	636	640	Right-handed 310
Helix 26	AC8	B	646	650	Right-handed 310
Helix 27	AC9	C	290	303	Right-handed alpha
Helix 28	AD1	C	310	314	Right-handed 310
Helix 29	AD2	C	324	338	Right-handed alpha
Helix 30	AD3	C	435	451	Right-handed alpha
Helix 31	AD4	C	475	500	Right-handed alpha
Helix 32	AD5	C	512	516	Right-handed 310
Helix 33	AD6	C	527	543	Right-handed alpha
Helix 34	AD7	C	568	581	Right-handed alpha
Helix 35	AD8	C	594	598	Right-handed 310
Helix 36	AD9	C	602	614	Right-handed alpha
Helix 37	AE1	C	615	627	Right-handed alpha
Helix 38	AE2	C	636	640	Right-handed 310
Helix 39	AE3	C	644	650	Right-handed 310
Helix 40	AE4	D	290	303	Right-handed alpha
Helix 41	AE5	D	310	314	Right-handed 310
Helix 42	AE6	D	327	332	Right-handed alpha
Helix 43	AE7	D	332	337	Right-handed alpha
Helix 44	AE8	D	435	451	Right-handed alpha
Helix 45	AE9	D	475	500	Right-handed alpha
Helix 46	AF1	D	512	516	Right-handed 310
Helix 47	AF2	D	527	543	Right-handed alpha
Helix 48	AF3	D	568	581	Right-handed alpha
Helix 49	AF4	D	594	598	Right-handed 310
Helix 50	AF5	D	603	614	Right-handed alpha
Helix 51	AF6	D	615	627	Right-handed alpha
Helix 52	AF7	D	636	640	Right-handed 310
Helix 53	AF8	D	646	650	Right-handed 310

There are 33 sheets in PDB entry 5F7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	42	50	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	78	83	anti-parallel
Strand 5	A	281	287	anti-parallel
Strand 6	A	250	254	anti-parallel
Strand 7	A	240	246	anti-parallel
Strand 8	A	205	209	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	42	50	anti-parallel
Strand 3	A	23	36	anti-parallel
Strand 4	A	181	186	anti-parallel
Strand 5	A	189	198	anti-parallel
Strand 6	A	271	276	anti-parallel
Strand 7	A	260	264	anti-parallel
Strand 8	A	220	224	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	153	155	anti-parallel
Strand 4	A	163	164	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	345	first strand
Strand 2	A	316	317	parallel
Strand 3	A	586	587	parallel
Strand 4	A	552	553	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	505	506	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	549	550	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	635	first strand
Strand 2	A	654	656	anti-parallel
Strand 3	A	660	662	anti-parallel
Strand 4	A	708	711	anti-parallel
Strand 5	A	681	683	anti-parallel
Strand 6	A	689	690	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	675	first strand
Strand 2	A	695	700	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	271	276	anti-parallel
Strand 5	B	260	264	anti-parallel
Strand 6	B	220	224	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	281	287	anti-parallel
Strand 5	B	250	254	anti-parallel
Strand 6	B	240	246	anti-parallel
Strand 7	B	205	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	128	131	anti-parallel
Strand 3	B	152	155	anti-parallel
Strand 4	B	163	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	345	first strand
Strand 2	B	315	317	parallel
Strand 3	B	585	587	parallel
Strand 4	B	552	553	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	505	506	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	520	first strand
Strand 2	B	549	550	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	654	656	anti-parallel
Strand 3	B	660	662	anti-parallel
Strand 4	B	708	711	anti-parallel
Strand 5	B	680	683	anti-parallel
Strand 6	B	689	691	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	671	676	first strand
Strand 2	B	694	700	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	23	31	anti-parallel
Strand 4	C	181	186	anti-parallel
Strand 5	C	189	198	anti-parallel
Strand 6	C	271	276	anti-parallel
Strand 7	C	260	264	anti-parallel
Strand 8	C	220	224	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	281	287	anti-parallel
Strand 5	C	250	254	anti-parallel
Strand 6	C	240	246	anti-parallel
Strand 7	C	205	209	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	128	131	anti-parallel
Strand 3	C	152	155	anti-parallel
Strand 4	C	163	164	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	345	first strand
Strand 2	C	316	317	parallel
Strand 3	C	586	587	parallel
Strand 4	C	552	553	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	458	459	first strand
Strand 2	C	505	506	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	520	first strand
Strand 2	C	549	550	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	635	first strand
Strand 2	C	654	656	anti-parallel
Strand 3	C	660	662	anti-parallel
Strand 4	C	708	711	anti-parallel
Strand 5	C	680	683	anti-parallel
Strand 6	C	689	691	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	671	675	first strand
Strand 2	C	695	700	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	46	48	anti-parallel
Strand 3	D	25	31	anti-parallel
Strand 4	D	181	186	anti-parallel
Strand 5	D	189	198	anti-parallel
Strand 6	D	271	276	anti-parallel
Strand 7	D	260	264	anti-parallel
Strand 8	D	220	224	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	108	109	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	281	287	anti-parallel
Strand 5	D	250	254	anti-parallel
Strand 6	D	240	246	anti-parallel
Strand 7	D	205	209	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	152	155	anti-parallel
Strand 3	D	163	164	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	345	first strand
Strand 2	D	316	317	parallel
Strand 3	D	586	587	parallel
Strand 4	D	552	553	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	459	first strand
Strand 2	D	505	506	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	519	520	first strand
Strand 2	D	549	550	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	634	635	first strand
Strand 2	D	654	656	anti-parallel
Strand 3	D	660	662	anti-parallel
Strand 4	D	708	711	anti-parallel
Strand 5	D	681	683	anti-parallel
Strand 6	D	689	690	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	671	675	first strand
Strand 2	D	695	700	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F7C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7C