Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5F7H entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5F7H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 3	VAL 115
A	SER 3	VAL 115
C	SER 3	ALA 113
D	SER 3	VAL 115
E	SER 3	VAL 115
F	SER 3	ALA 113

There are 11 helices in PDB entry 5F7H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	68	72	Right-handed 310
Helix 2	AA2	B	82	86	Right-handed 310
Helix 3	AA3	A	68	72	Right-handed 310
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	C	68	72	Right-handed 310
Helix 6	AA6	C	82	86	Right-handed 310
Helix 7	AA7	D	68	72	Right-handed 310
Helix 8	AA8	D	82	86	Right-handed 310
Helix 9	AA9	E	68	72	Right-handed 310
Helix 10	AB1	F	68	72	Right-handed 310
Helix 11	AB2	F	82	86	Right-handed 310

There are 10 sheets in PDB entry 5F7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	102	111	parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	30	35	anti-parallel
Strand 5	B	48	50	anti-parallel
Strand 6	B	55	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	76	79	anti-parallel
Strand 3	B	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	48	50	anti-parallel
Strand 3	A	30	35	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	102	111	anti-parallel
Strand 6	A	4	10	parallel
Strand 7	F	102	112	anti-parallel
Strand 8	F	4	10	parallel
Strand 9	E	4	10	anti-parallel
Strand 10	E	102	111	parallel
Strand 11	E	87	94	anti-parallel
Strand 12	E	30	35	anti-parallel
Strand 13	E	48	50	anti-parallel
Strand 14	E	55	58	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	58	first strand
Strand 2	A	48	50	anti-parallel
Strand 3	A	30	35	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	102	111	anti-parallel
Strand 6	A	4	10	parallel
Strand 7	F	102	112	anti-parallel
Strand 8	F	87	94	anti-parallel
Strand 9	F	30	35	anti-parallel
Strand 10	F	48	50	anti-parallel
Strand 11	F	55	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	76	79	anti-parallel
Strand 3	A	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	58	first strand
Strand 2	C	48	50	anti-parallel
Strand 3	C	30	35	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	102	111	anti-parallel
Strand 6	C	4	10	parallel
Strand 7	D	4	10	anti-parallel
Strand 8	D	102	111	parallel
Strand 9	D	87	94	anti-parallel
Strand 10	D	30	35	anti-parallel
Strand 11	D	48	50	anti-parallel
Strand 12	D	55	58	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	76	78	anti-parallel
Strand 3	C	63	65	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	76	78	anti-parallel
Strand 3	D	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	76	78	anti-parallel
Strand 3	E	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	76	78	anti-parallel
Strand 3	F	63	64	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5F7H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5F7H